-
Notifications
You must be signed in to change notification settings - Fork 0
/
CITATION.cff
331 lines (329 loc) · 9.58 KB
/
CITATION.cff
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
cff-version: 1.2.0
message: 'To cite package "daedalus" in publications use:'
type: software
license: MIT
title: 'daedalus: Optimise economic, social and health trade-offs in a pandemic'
version: 0.0.4
abstract: Model and optimise the trade-offs between social and economic activity while
containing a pandemic, as presented in Haw et al. (2022) <doi.org/10.1038/s43588-022-00233-0>.
authors:
- family-names: Gupte
given-names: Pratik
email: p.gupte24@imperial.ac.uk
orcid: https://orcid.org/0000-0001-5294-7819
repository-code: https://github.com/j-idea/daedalus
url: https://github.com/j-idea/daedalus
contact:
- family-names: Gupte
given-names: Pratik
email: p.gupte24@imperial.ac.uk
orcid: https://orcid.org/0000-0001-5294-7819
keywords:
- decision-support
- epidemiological-models
- health-economics
- pandemic-preparedness
- public-health
- r-package
- sdg-3
references:
- type: software
title: 'R: A Language and Environment for Statistical Computing'
notes: Depends
url: https://www.R-project.org/
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2024'
version: '>= 2.10'
- type: software
title: checkmate
abstract: 'checkmate: Fast and Versatile Argument Checks'
notes: Imports
url: https://mllg.github.io/checkmate/
repository: https://CRAN.R-project.org/package=checkmate
authors:
- family-names: Lang
given-names: Michel
email: michellang@gmail.com
orcid: https://orcid.org/0000-0001-9754-0393
year: '2024'
doi: 10.32614/CRAN.package.checkmate
- type: software
title: cli
abstract: 'cli: Helpers for Developing Command Line Interfaces'
notes: Imports
url: https://cli.r-lib.org
repository: https://CRAN.R-project.org/package=cli
authors:
- family-names: Csárdi
given-names: Gábor
email: csardi.gabor@gmail.com
year: '2024'
doi: 10.32614/CRAN.package.cli
- type: software
title: deSolve
abstract: 'deSolve: Solvers for Initial Value Problems of Differential Equations
(''ODE'', ''DAE'', ''DDE'')'
notes: Imports
url: http://desolve.r-forge.r-project.org/
repository: https://CRAN.R-project.org/package=deSolve
authors:
- family-names: Soetaert
given-names: Karline
email: karline.soetaert@nioz.nl
orcid: https://orcid.org/0000-0003-4603-7100
- family-names: Petzoldt
given-names: Thomas
email: thomas.petzoldt@tu-dresden.de
orcid: https://orcid.org/0000-0002-4951-6468
- family-names: Setzer
given-names: R. Woodrow
email: setzer.woodrow@epa.gov
orcid: https://orcid.org/0000-0002-6709-9186
year: '2024'
doi: 10.32614/CRAN.package.deSolve
- type: software
title: rlang
abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
notes: Imports
url: https://rlang.r-lib.org
repository: https://CRAN.R-project.org/package=rlang
authors:
- family-names: Henry
given-names: Lionel
email: lionel@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2024'
doi: 10.32614/CRAN.package.rlang
- type: software
title: data.table
abstract: 'data.table: Extension of `data.frame`'
notes: Suggests
url: https://r-datatable.com
repository: https://CRAN.R-project.org/package=data.table
authors:
- family-names: Barrett
given-names: Tyson
email: t.barrett88@gmail.com
orcid: https://orcid.org/0000-0002-2137-1391
- family-names: Dowle
given-names: Matt
email: mattjdowle@gmail.com
- family-names: Srinivasan
given-names: Arun
email: asrini@pm.me
- family-names: Gorecki
given-names: Jan
- family-names: Chirico
given-names: Michael
orcid: https://orcid.org/0000-0003-0787-087X
- family-names: Hocking
given-names: Toby
orcid: https://orcid.org/0000-0002-3146-0865
- family-names: Schwendinger
given-names: Benjamin
orcid: https://orcid.org/0000-0003-3315-8114
year: '2024'
doi: 10.32614/CRAN.package.data.table
- type: software
title: ggplot2
abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
notes: Suggests
url: https://ggplot2.tidyverse.org
repository: https://CRAN.R-project.org/package=ggplot2
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: Chang
given-names: Winston
orcid: https://orcid.org/0000-0002-1576-2126
- family-names: Henry
given-names: Lionel
- family-names: Pedersen
given-names: Thomas Lin
email: thomas.pedersen@posit.co
orcid: https://orcid.org/0000-0002-5147-4711
- family-names: Takahashi
given-names: Kohske
- family-names: Wilke
given-names: Claus
orcid: https://orcid.org/0000-0002-7470-9261
- family-names: Woo
given-names: Kara
orcid: https://orcid.org/0000-0002-5125-4188
- family-names: Yutani
given-names: Hiroaki
orcid: https://orcid.org/0000-0002-3385-7233
- family-names: Dunnington
given-names: Dewey
orcid: https://orcid.org/0000-0002-9415-4582
- family-names: Brand
given-names: Teun
name-particle: van den
orcid: https://orcid.org/0000-0002-9335-7468
year: '2024'
doi: 10.32614/CRAN.package.ggplot2
- type: software
title: glue
abstract: 'glue: Interpreted String Literals'
notes: Suggests
url: https://glue.tidyverse.org/
repository: https://CRAN.R-project.org/package=glue
authors:
- family-names: Hester
given-names: Jim
orcid: https://orcid.org/0000-0002-2739-7082
- family-names: Bryan
given-names: Jennifer
email: jenny@posit.co
orcid: https://orcid.org/0000-0002-6983-2759
year: '2024'
doi: 10.32614/CRAN.package.glue
- type: software
title: knitr
abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
notes: Suggests
url: https://yihui.org/knitr/
repository: https://CRAN.R-project.org/package=knitr
authors:
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
year: '2024'
doi: 10.32614/CRAN.package.knitr
- type: software
title: rmarkdown
abstract: 'rmarkdown: Dynamic Documents for R'
notes: Suggests
url: https://pkgs.rstudio.com/rmarkdown/
repository: https://CRAN.R-project.org/package=rmarkdown
authors:
- family-names: Allaire
given-names: JJ
email: jj@posit.co
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
- family-names: Dervieux
given-names: Christophe
email: cderv@posit.co
orcid: https://orcid.org/0000-0003-4474-2498
- family-names: McPherson
given-names: Jonathan
email: jonathan@posit.co
- family-names: Luraschi
given-names: Javier
- family-names: Ushey
given-names: Kevin
email: kevin@posit.co
- family-names: Atkins
given-names: Aron
email: aron@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
- family-names: Cheng
given-names: Joe
email: joe@posit.co
- family-names: Chang
given-names: Winston
email: winston@posit.co
- family-names: Iannone
given-names: Richard
email: rich@posit.co
orcid: https://orcid.org/0000-0003-3925-190X
year: '2024'
doi: 10.32614/CRAN.package.rmarkdown
- type: software
title: socialmixr
abstract: 'socialmixr: Social Mixing Matrices for Infectious Disease Modelling'
notes: Suggests
url: https://epiforecasts.io/socialmixr/
repository: https://CRAN.R-project.org/package=socialmixr
authors:
- family-names: Funk
given-names: Sebastian
email: sebastian.funk@lshtm.ac.uk
- family-names: Willem
given-names: Lander
- family-names: Gruson
given-names: Hugo
year: '2024'
doi: 10.32614/CRAN.package.socialmixr
- type: software
title: spelling
abstract: 'spelling: Tools for Spell Checking in R'
notes: Suggests
url: https://ropensci.r-universe.dev/spelling
repository: https://CRAN.R-project.org/package=spelling
authors:
- family-names: Ooms
given-names: Jeroen
email: jeroen@berkeley.edu
orcid: https://orcid.org/0000-0002-4035-0289
- family-names: Hester
given-names: Jim
email: james.hester@rstudio.com
year: '2024'
doi: 10.32614/CRAN.package.spelling
- type: software
title: stats
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Suggests
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2024'
- type: software
title: testthat
abstract: 'testthat: Unit Testing for R'
notes: Suggests
url: https://testthat.r-lib.org
repository: https://CRAN.R-project.org/package=testthat
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2024'
doi: 10.32614/CRAN.package.testthat
version: '>= 3.0.0'
- type: software
title: withr
abstract: 'withr: Run Code ''With'' Temporarily Modified Global State'
notes: Suggests
url: https://withr.r-lib.org
repository: https://CRAN.R-project.org/package=withr
authors:
- family-names: Hester
given-names: Jim
- family-names: Henry
given-names: Lionel
email: lionel@posit.co
- family-names: Müller
given-names: Kirill
email: krlmlr+r@mailbox.org
- family-names: Ushey
given-names: Kevin
email: kevinushey@gmail.com
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
- family-names: Chang
given-names: Winston
year: '2024'
doi: 10.32614/CRAN.package.withr