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@jbloomlab

jbloomlab

Jesse Bloom's lab GitHub account

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  1. phydms phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    HTML 14 4

  2. dms_tools2 dms_tools2 Public

    software for the analysis and visualization of deep mutational scanning data

    Python 32 20

  3. dmslogo dmslogo Public

    draw sequence logos tailored to deep mutational scanning (DMS) data

    Jupyter Notebook 12 1

  4. neutcurve neutcurve Public

    Fit and plot neutralization curves

    Jupyter Notebook 9 3

Repositories

Showing 10 of 136 repositories
  • flu_seqneut_H3N2_2023-2024 Public

    sequencing-based neutralization assay on H3N2 HA variants from 2023-2024

    jbloomlab/flu_seqneut_H3N2_2023-2024’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Oct 29, 2024
  • SARS2-mut-fitness Public

    Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates

    jbloomlab/SARS2-mut-fitness’s past year of commit activity
    Jupyter Notebook 19 MIT 5 4 2 Updated Oct 29, 2024
  • bench-to-byte Public

    A biologist's guide to crafting quality code

    jbloomlab/bench-to-byte’s past year of commit activity
    JavaScript 2 0 1 0 Updated Oct 28, 2024
  • Ab-CGGnaive_DMS Public

    deep mutational scanning of the CGGnaive antibody

    jbloomlab/Ab-CGGnaive_DMS’s past year of commit activity
    Jupyter Notebook 1 0 3 2 Updated Oct 25, 2024
  • jbloomlab.github.io Public

    A website for the Bloom lab

    jbloomlab/jbloomlab.github.io’s past year of commit activity
    Vue 0 0 0 0 Updated Oct 23, 2024
  • Flu-HA-H5-2.3.4.4-DMS-informed-surveillance Public

    Deep mutational scanning phenotypes of clade 2.3.4.4b influenza H5 HA

    jbloomlab/Flu-HA-H5-2.3.4.4-DMS-informed-surveillance’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 21, 2024
  • ZIKV_DMS_NS5_EvansLab Public

    deep mutational scanning of ZIKV E protein +/- IFN with Matt Evans lab

    jbloomlab/ZIKV_DMS_NS5_EvansLab’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 12, 2024
  • SARS2-spike-predictor-phenos Public

    SARS-CoV-2 spike phenotypes (from DMS and other sources) potentially useful for predicting evolution

    jbloomlab/SARS2-spike-predictor-phenos’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 1 Updated Oct 7, 2024
  • seqneut-pipeline Public

    Pipeline for analyzing sequencing-based neutralization assays

    jbloomlab/seqneut-pipeline’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 7, 2024
  • SARS2-RBD-escape-calc Public

    SARS-CoV-2 RBD antibody escape calculator

    jbloomlab/SARS2-RBD-escape-calc’s past year of commit activity
    Jupyter Notebook 11 GPL-3.0 2 0 0 Updated Sep 27, 2024
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