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* update to `dms_variants` 1.5.0 * format with newest version of `black` * update `dms_variants` in `count_barcodes.yml` env
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@@ -20,5 +20,5 @@ dependencies: | |
- snakemake=8.0.1 | ||
- ruff | ||
- pip: | ||
- dms_variants==1.4.3 | ||
- dms_variants==1.5.0 | ||
- neutcurve==1.1.2 |
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@@ -10,4 +10,4 @@ dependencies: | |
- pip | ||
- python=3.11 | ||
- pip: | ||
- dms_variants==1.4.3 | ||
- dms_variants==1.5.0 |
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"""Implements ``snakemake`` rule to translate gene sequence.""" | ||
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import os | ||
import shutil | ||
import sys | ||
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"""Count barcodes from FASTQ barcodes.""" | ||
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import sys | ||
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import dms_variants.illuminabarcodeparser | ||
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"""Process QC for serum titers.""" | ||
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import sys | ||
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"""Get list of sera and plates for each.""" | ||
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import sys | ||
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import pandas as pd | ||
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@@ -4,7 +4,6 @@ Designed to be included in another ``Snakefile`` that specifies the config. | |
""" | ||
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import pandas as pd | ||
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"""Top-level ``snakemake`` file that runs analysis.""" | ||
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import os | ||
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"""Test script to test titers as expected.""" | ||
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import numpy | ||
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import pandas as pd | ||
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