docker MEME Suite

Docker image to easy run The MEME Suite in web mode.

version 5.1.0 (October 2019) supported.

Quickstart

• Run $docker run -p 8080:8080 eugenemaxim/docker-meme-suite-web:latest
• Open http://localhost:8080/meme_5.1.0/

Usage

To start MeMe web service run the container

$docker run -p [hostIp]:<hostPort>:8080 eugenemaxim/docker-meme-suite-web:latest webstart [endpoint]

• hostIp, hostPort - ip and port of the host read docs
• endpoint - Your MeMe suite endpont. It will be used in jobs email reports and internally by server (it uses iframes with that endpoint). So it must be relative or resolveable from end user environment and point to the container host and port. Default is "/"

Example:

$docker run -p 192.168.0.50:80:8080 eugenemaxim/docker-meme-suite-web:latest webstart http://my-local-domain/

Command line interface also supported

docker run -v /abspath/to/yourdata:/home/meme -it opalhome meme mydata.fa

ToDo

• databases download
• comfortable work with volumes in cmdline mode
• Reduce image size
• Reduce build time

Acknowledgement

Meme Suite is free for educational, research and non-profit purposes

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All tests passed

============================================================================
Testsuite summary for meme 5.1.0
============================================================================
# TOTAL: 150
# PASS:  150
# SKIP:  0
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================