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Generified Flow Search Algorithms #2

Merged
merged 108 commits into from
Aug 25, 2016
Merged

Generified Flow Search Algorithms #2

merged 108 commits into from
Aug 25, 2016

Commits on Apr 14, 2016

  1. Initial implementation of predicate-based flow scanner and an increme… 

    …ntal analyzer for flow graphs
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  2. Pacify FindBugs

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Commits on Apr 18, 2016

  1. Tests for the unrefactored FlowScanner

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  2. WIP on pulling out generalized flowscanning algorithms

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Commits on Apr 19, 2016

  1. Flesh out/fix most of the flow scanner implementations

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  2. Finish tests for FlowScanner algorithms and fix remaining edge cases

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  3. Add visitor method to FlowScanner for collecting stats while walking … 

    …the graph
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  4. Fix FindBugs complaints

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  5. Flesh out incremental analysis cache skeleton

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  6. Move FlowScanner method to search by StepDescriptor into test only to… 

    … avoid a cyclic plugin dependency
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Commits on Apr 25, 2016

  1. Rename findAllMatches to filter

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  2. Refactor flow graph incremental analysis, add stub of a test until I … 

    …can figure out how to get it to use something like semaphore step
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  3. Fix imports in incremental flow analysis

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Commits on Apr 26, 2016

  1. Refactor the incremental flow analysis to allow testing by running in… 

    …crementally
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  2. Remove the incremental flow analysis so we can push it into a separat… 

    …e PR
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Commits on Apr 27, 2016

  1. Start a ForkFlowScanner (WIP), add lots of Javadoc/comments, rename B… 

    …lockHoppingScanner to indicate it is linear
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  2. Syntactic sugar and comments on FlowScanner

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Commits on Apr 30, 2016

  1. FlowScanner: switch to simpler iterator use internally, add filterato… 

    …r, rewrite internals for iterator, add block test
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Commits on May 2, 2016

  1. More AbstractFlowScanner helpers, add iterator on block starts, add t… 

    …ests, fix blockhoppingscanner
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  2. FlowScanning: ForkScanner passes in basic case, next up is testing ne… 

    …sted parallel blocks and blackListing
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Commits on May 3, 2016

  1. Add standard gitignore items

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  2. Test ForkScanner blacklisting with parallel branches & fix issues

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  3. Refactor FlowScanner & affiliated classes to be prepare for review

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  4. Massive refactor: give graph analysis its own package, and split the … 

    …different flow scanners into individual classes
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  5. Rename graphanalysis test package

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  6. Optimize the DepthFirstWalker by non tracking non-BlockStart nodes

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Commits on May 17, 2016

  1. Save the WIP for ForkScanner with multiple heads

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  2. Add explanation header to AbstractFlowScanner

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  3. Clean up from initial review: add and fix javadocs, refactor some fie… 

    …ld names, make visitAll method take a blackList and add helper for it
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  4. Small changes from review, and @nonnull annotations on FlowNode

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  5. More changes from review

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Commits on May 18, 2016

  1. Refactor and fixes from last refactor

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  2. Finish stripping down the ForkScanner and the core least-common-ancestor

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  3. Somewhat better behaved version of ForkScanner, just need to fix blac… 

    …klisting
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Commits on May 19, 2016

  1. Fix blacklisting, remove unused fields of ForkScanner objects

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Commits on May 24, 2016

  1. Add suggested review API, add a missing NotNull, explain the null han… 

    …dling behavior in the abstract APIs
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  2. LinearFlowScanner test is deterministic

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Commits on May 25, 2016

  1. Add megatest for FlowScanner abstract functionality 

    This allows implementation tests to mostly cover iteration/blacklist use
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  2. Harden the flowscanner tests for ordering, clean up

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  3. Refactor forkscanner, create dedicated tests, fix splitting

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  4. WIP for ForkScanner - tests and 1 fix for leastCommonAncestor

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Commits on May 31, 2016

  1. Fix the remaining issues with LeastCommonAncestor core & add comments

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  2. Fix unused imports

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  3. Fix remaining bugs in ForkScanner, add test, and clean up docs/commme… 

    …nts there
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  4. Tidy up and HTML format the graph analysis javadocs

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  5. More javadocs + package annotation for graphanalysis

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Commits on Jun 7, 2016

  1. For graph analysis add a FlowChunk object to use in analysis APIs

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Commits on Jun 8, 2016

  1. For flow scanning, add an in-memory representation of timed blocks

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  2. Add a parallel flow chunk for duration computation

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Commits on Jun 9, 2016

  1. Define interface for chunk storage

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Commits on Jun 10, 2016

  1. Save simple block visitor

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  2. Basic forkscanner block API

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  3. Add status handling and memory storage engine to graph analysis

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  4. Carve out advanced visitor methods

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  5. Advanced visitor for carving up flows (skeletal impl) and parallel ha… 

    …ndling in storage engines
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Commits on Jul 24, 2016

  1. Chunk and block storage types

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  2. Merge branch 'master' into block-scanning-APIs

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  3. Customize SNAPSHOT version so we can distinguish this from master sna… 

    …pshot
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Commits on Aug 5, 2016

  1. Remove all the parts not needed for raw block scanning

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  2. Formalize the block visitor API with parallels and branches yet again

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  3. Harden ChunkVisitor and start a FlowChunker

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Commits on Aug 8, 2016

  1. Forkscanner now tracks state that shows what kind of nodes we have (a… 

    …nd what the next one is)
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Commits on Aug 10, 2016

  1. When splitting chunks you need to know previous node for inclusive vs… 

    …. exclusive endpoints
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  2. Add some peeking methods to ForkScanner and also a few small access/f… 

    …indbugs fixes
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  3. Finish the internal SimpleChunkVisitor iteration logic in ForkScanner… 

    …, refactor
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  4. Remove the useless peek methods

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  5. Fix test failure

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  6. More small fixes

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Commits on Aug 11, 2016

  1. Test visitor and tests for visitor iteration in ForkScanner

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  2. Soften requirements for MemoryFlowChunk

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  3. Remove unused StandardSimpleChunkVisitor for now

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Commits on Aug 12, 2016

  1. Add pause timing to MemoryFlowChunk

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  2. Fixes and test fixes for simple visitor parallels

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  3. Add standard visitor and convenience methods for forkscanner/simpleCh… 

    …unkVisitor
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  4. Cleanup for reviews

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  5. Merge branch 'master' into generic-flow-analyzer

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  6. Merge branch 'generic-flow-analyzer' into block-scanning-APIs

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  7. Remove dangling file

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  8. Oh yeah I meant to change the versioning

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  9. Better reset the pause time for StandardChunkVisitor

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  10. Rename finder and add the stagefinder that I removed earlier

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  11. Remove unused BlockVisitor from early prototypes

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  12. Fix minor oopsy

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Commits on Aug 15, 2016

  1. Remove StageChunkFinder because BlockScopedStages need some additiona… 

    …l deps to handle fully
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Commits on Aug 17, 2016

  1. Cleanup author annotation misformatting for javadoc

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  2. Make all paragraph tags in javadocs not self-closing to placate javadocs

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  3. Placate more javadocs complaints

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  4. Fix more javadocs complaints and silence doclint nonsense

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Commits on Aug 19, 2016

  1. More exhaustive tests for SimpleVisitor and fix a pair of swapped arg… 

    …s on AtomNode calls
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  2. Address review comments from @oleg-nenashev

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Commits on Aug 21, 2016

  1. Fix an off-by-one case in ForkScanner with parallels and add more ext… 

    …ensive test coverage
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  2. Restrive access to some of ForkScanner internals

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  3. Remove unused totalBranches field in ForkScanner

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Commits on Aug 23, 2016

  1. Address review comments from @oleg-nenashev

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  2. Apply a few small review changes

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  3. Re-enable linting just to see how much pain there is

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Commits on Aug 24, 2016

  1. Javadocs update

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  2. Fix more JavaDocs formatting due to DocLint being a jerk.

    @svanoort
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  3. Fix yet more doclint whining

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  4. OMG doclint really

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  5. Address review comments, mostly javadocs

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  6. Merge branch 'block-scanning-APIs' into generic-flow-analyzer 

    Resolves trivial conflict due to javadoc changes
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  7. Javadoc error.

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  8. Solved a javadoc hiccup

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  9. Remove accidentally commit merge files

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  10. Revert special versioning in prep for release

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  11. Fix a missing DepthFirstScanner reset of field

    @svanoort
    svanoort committed Aug 24, 2016
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Commits on Aug 25, 2016

  1. Fix and thoroughly test against a bug with ForkScanner failing when h… 

    …anded just the branch start nodes for a parallel block
    @svanoort
    svanoort committed Aug 25, 2016
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