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index.html
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<!DOCTYPE html>
<html lang="en"><head>
<script src="index_files/libs/clipboard/clipboard.min.js"></script>
<script src="index_files/libs/quarto-html/tabby.min.js"></script>
<script src="index_files/libs/quarto-html/popper.min.js"></script>
<script src="index_files/libs/quarto-html/tippy.umd.min.js"></script>
<link href="index_files/libs/quarto-html/tippy.css" rel="stylesheet">
<link href="index_files/libs/quarto-html/quarto-html.min.css" rel="stylesheet" data-mode="light">
<link href="index_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles"><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta name="generator" content="quarto-1.0.35">
<meta name="dcterms.date" content="2022-07-30">
<title>index</title>
<meta name="apple-mobile-web-app-capable" content="yes">
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
<link rel="stylesheet" href="index_files/libs/revealjs/dist/reset.css">
<link rel="stylesheet" href="index_files/libs/revealjs/dist/reveal.css">
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
pre > code.sourceCode { white-space: pre; position: relative; }
pre > code.sourceCode > span { display: inline-block; line-height: 1.25; }
pre > code.sourceCode > span:empty { height: 1.2em; }
.sourceCode { overflow: visible; }
code.sourceCode > span { color: inherit; text-decoration: inherit; }
div.sourceCode { margin: 1em 0; }
pre.sourceCode { margin: 0; }
@media screen {
div.sourceCode { overflow: auto; }
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
pre.numberSource code > span
{ position: relative; left: -4em; counter-increment: source-line; }
pre.numberSource code > span > a:first-child::before
{ content: counter(source-line);
position: relative; left: -1em; text-align: right; vertical-align: baseline;
border: none; display: inline-block;
-webkit-touch-callout: none; -webkit-user-select: none;
-khtml-user-select: none; -moz-user-select: none;
-ms-user-select: none; user-select: none;
padding: 0 4px; width: 4em;
color: #767676;
}
pre.numberSource { margin-left: 3em; border-left: 1px solid #767676; padding-left: 4px; }
div.sourceCode
{ color: #545454; background-color: #fefefe; }
@media screen {
pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
}
code span { color: #545454; } /* Normal */
code span.al { color: #7928a1; } /* Alert */
code span.an { color: #696969; } /* Annotation */
code span.at { color: #aa5d00; } /* Attribute */
code span.bn { color: #7928a1; } /* BaseN */
code span.bu { } /* BuiltIn */
code span.cf { color: #d91e18; } /* ControlFlow */
code span.ch { color: #008000; } /* Char */
code span.cn { color: #d91e18; } /* Constant */
code span.co { color: #696969; } /* Comment */
code span.cv { color: #696969; font-style: italic; } /* CommentVar */
code span.do { color: #696969; font-style: italic; } /* Documentation */
code span.dt { color: #7928a1; } /* DataType */
code span.dv { color: #7928a1; } /* DecVal */
code span.er { color: #7928a1; } /* Error */
code span.ex { } /* Extension */
code span.fl { color: #aa5d00; } /* Float */
code span.fu { color: #06287e; } /* Function */
code span.im { } /* Import */
code span.in { color: #696969; } /* Information */
code span.kw { color: #d91e18; } /* Keyword */
code span.op { color: #007faa; } /* Operator */
code span.ot { color: #d91e18; } /* Other */
code span.pp { color: #7928a1; } /* Preprocessor */
code span.sc { color: #007faa; } /* SpecialChar */
code span.ss { color: #008000; } /* SpecialString */
code span.st { color: #008000; } /* String */
code span.va { color: #aa5d00; } /* Variable */
code span.vs { color: #008000; } /* VerbatimString */
code span.wa { color: #696969; font-style: italic; } /* Warning */
</style>
<link rel="stylesheet" href="index_files/libs/revealjs/dist/theme/quarto.css" id="theme">
<link href="index_files/libs/revealjs/plugin/quarto-line-highlight/line-highlight.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-menu/menu.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-menu/quarto-menu.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-chalkboard/font-awesome/css/all.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/reveal-chalkboard/style.css" rel="stylesheet">
<link href="index_files/libs/revealjs/plugin/quarto-support/footer.css" rel="stylesheet">
<style type="text/css">
.callout {
margin-top: 1em;
margin-bottom: 1em;
border-radius: .25rem;
}
.callout.callout-style-simple {
padding: 0em 0.5em;
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
display: flex;
}
.callout.callout-style-default {
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
}
.callout .callout-body-container {
flex-grow: 1;
}
.callout.callout-style-simple .callout-body {
font-size: 1rem;
font-weight: 400;
}
.callout.callout-style-default .callout-body {
font-size: 0.9rem;
font-weight: 400;
}
.callout.callout-captioned.callout-style-simple .callout-body {
margin-top: 0.2em;
}
.callout:not(.callout-captioned) .callout-body {
display: flex;
}
.callout:not(.no-icon).callout-captioned.callout-style-simple .callout-content {
padding-left: 1.6em;
}
.callout.callout-captioned .callout-header {
padding-top: 0.2em;
margin-bottom: -0.2em;
}
.callout.callout-captioned .callout-caption p {
margin-top: 0.5em;
margin-bottom: 0.5em;
}
.callout.callout-captioned.callout-style-simple .callout-content p {
margin-top: 0;
}
.callout.callout-captioned.callout-style-default .callout-content p {
margin-top: 0.7em;
}
.callout.callout-style-simple div.callout-caption {
border-bottom: none;
font-size: .9rem;
font-weight: 600;
opacity: 75%;
}
.callout.callout-style-default div.callout-caption {
border-bottom: none;
font-weight: 600;
opacity: 85%;
font-size: 0.9rem;
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-default div.callout-content {
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-simple .callout-icon::before {
height: 1rem;
width: 1rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 1rem 1rem;
}
.callout.callout-style-default .callout-icon::before {
height: 0.9rem;
width: 0.9rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 0.9rem 0.9rem;
}
.callout-caption {
display: flex
}
.callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
.callout.no-icon::before {
display: none !important;
}
.callout.callout-captioned .callout-body > .callout-content > :last-child {
margin-bottom: 0.5rem;
}
.callout.callout-captioned .callout-icon::before {
margin-top: .5rem;
padding-right: .5rem;
}
.callout:not(.callout-captioned) .callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
/* Callout Types */
div.callout-note {
border-left-color: #4582ec !important;
}
div.callout-note .callout-icon::before {
background-image: url('data:image/png;base64,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');
}
div.callout-note.callout-style-default .callout-caption {
background-color: #dae6fb
}
div.callout-important {
border-left-color: #d9534f !important;
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<meta name="twitter:title" content="revealjs slides by way of Quarto and R">
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<div class="slides">
<section id="section" class="title-slide slide level1" data-transition="slide" data-transition-speed="slow"><h1></h1>
<div class="title-center">
<p>Quarto as reveal.js Slides</p>
</div>
<div class="center">
<p>here is R once again being useful</p>
</div>
<div class="half-image">
<p><img data-src="www/icons.png" alt="icons for Quarto, gt, and gtExtras"></p>
</div>
<div class="author">
<p>Jeremy Allen<br> Customer Success, RStudio<br> twitter: <span class="citation" data-cites="jeremy_data">@jeremy_data</span></p>
</div>
</section><section><section id="a-demo-of-quarto-gt-and-gtextras" class="title-slide slide level1" data-transition="slide" data-transition-speed="slow"><h1>A demo of <code>Quarto</code>, <code>gt</code>, and <code>gtExtras</code>
</h1>
<p>using <code>palmerpenguins</code> data</p>
<p><br><br></p>
<div class="fragment">
<dl>
<dt>Quarto®</dt>
<dd>
Quarto is an open-source scientific and technical publishing system built on Pandoc.
</dd>
</dl>
</div>
<div class="fragment">
<dl>
<dt>gt</dt>
<dd>
With the gt package, anyone can make wonderful-looking tables using the R programming language, and a cohesive set of table parts, such as the table header, stub, column labels and spanner column labels, table body, and the table footer.
</dd>
</dl>
</div>
<div class="fragment">
<dl>
<dt>gtExtras</dt>
<dd>
The goal of gtExtras is to provide some additional helper functions to assist in creating beautiful tables with gt.
</dd>
</dl>
</div>
</section><section id="before-we-talk-about-quarto" class="slide level2" data-transition="slide" data-transition-speed="slow"><h2>Before we talk about Quarto</h2>
<p>let’s build a <code>gt</code> table and experience some Quarto features</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1"></a><span class="fu">library</span>(tidyverse)</span>
<span id="cb1-2"><a href="#cb1-2"></a><span class="fu">library</span>(palmerpenguins)</span>
<span id="cb1-3"><a href="#cb1-3"></a><span class="fu">library</span>(gt)</span>
<span id="cb1-4"><a href="#cb1-4"></a><span class="fu">library</span>(gtExtras)</span>
<span id="cb1-5"><a href="#cb1-5"></a></span>
<span id="cb1-6"><a href="#cb1-6"></a><span class="co"># make a table of our data</span></span>
<span id="cb1-7"><a href="#cb1-7"></a><span class="co"># but let's summarize by year, so first make a year column</span></span>
<span id="cb1-8"><a href="#cb1-8"></a>dat <span class="ot"><-</span> penguins <span class="sc">%>%</span></span>
<span id="cb1-9"><a href="#cb1-9"></a> dplyr<span class="sc">::</span><span class="fu">arrange</span>(year) <span class="sc">%>%</span> </span>
<span id="cb1-10"><a href="#cb1-10"></a> <span class="fu">mutate</span>(<span class="at">year =</span> <span class="fu">as.factor</span>(year)) <span class="sc">%>%</span> </span>
<span id="cb1-11"><a href="#cb1-11"></a> <span class="fu">group_by</span>(species, island, year) <span class="sc">%>%</span> <span class="co"># order here will influence table output</span></span>
<span id="cb1-12"><a href="#cb1-12"></a> <span class="fu">summarise</span>(<span class="fu">across</span>(bill_length_mm<span class="sc">:</span>body_mass_g, <span class="sc">~</span> <span class="fu">mean</span>(., <span class="at">na.rm =</span> <span class="cn">TRUE</span>))) <span class="sc">%>%</span></span>
<span id="cb1-13"><a href="#cb1-13"></a> <span class="fu">select</span>(species, island, year, <span class="fu">everything</span>()) <span class="sc">%>%</span> </span>
<span id="cb1-14"><a href="#cb1-14"></a> dplyr<span class="sc">::</span><span class="fu">arrange</span>(species, island, year) <span class="sc">%>%</span> </span>
<span id="cb1-15"><a href="#cb1-15"></a> <span class="fu">ungroup</span>() <span class="co"># experiment with and without</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
</section><section id="build-the-table-with-gt-include-some-gtextras-functions-for-colors" class="slide level2"><h2>Build the table with gt, include some gtExtras functions for colors</h2>
<p><code>gt</code>’s default is to produce an html table<br>
Let’s first group our data by penguin species</p>
<div class="cell columns column-output-location">
<div class="column">
<div class="sourceCode cell-code" id="cb2" data-code-line-numbers="|3"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1"></a><span class="co"># table using gt package</span></span>
<span id="cb2-2"><a href="#cb2-2"></a>dat <span class="sc">%>%</span> </span>
<span id="cb2-3"><a href="#cb2-3"></a> dplyr<span class="sc">::</span><span class="fu">group_by</span>(species) <span class="sc">%>%</span> <span class="co"># add a grouping variable and drop stub info</span></span>
<span id="cb2-4"><a href="#cb2-4"></a> <span class="fu">gt</span>()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div><div class="column">
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</style>
<table class="gt_table">
<thead class="gt_col_headings"><tr>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1">island</th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1">year</th>
<th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1">bill_length_mm</th>
<th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1">bill_depth_mm</th>
<th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1">flipper_length_mm</th>
<th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1">body_mass_g</th>
</tr></thead>
<tbody class="gt_table_body">
<tr class="gt_group_heading_row">
<td colspan="6" class="gt_group_heading">Adelie</td>
</tr>
<tr class="gt_row_group_first">
<td class="gt_row gt_center">Biscoe</td>
<td class="gt_row gt_center">2007</td>
<td class="gt_row gt_right">38.32000</td>
<td class="gt_row gt_right">18.44000</td>
<td class="gt_row gt_right">181.7000</td>
<td class="gt_row gt_right">3620.000</td>
</tr>
<tr>
<td class="gt_row gt_center">Biscoe</td>
<td class="gt_row gt_center">2008</td>
<td class="gt_row gt_right">38.70000</td>
<td class="gt_row gt_right">18.12778</td>
<td class="gt_row gt_right">189.5556</td>
<td class="gt_row gt_right">3627.778</td>
</tr>
<tr>
<td class="gt_row gt_center">Biscoe</td>
<td class="gt_row gt_center">2009</td>
<td class="gt_row gt_right">39.69375</td>
<td class="gt_row gt_right">18.60000</td>
<td class="gt_row gt_right">192.3750</td>
<td class="gt_row gt_right">3857.812</td>
</tr>
<tr>
<td class="gt_row gt_center">Dream</td>
<td class="gt_row gt_center">2007</td>
<td class="gt_row gt_right">39.10000</td>
<td class="gt_row gt_right">18.69000</td>
<td class="gt_row gt_right">186.5000</td>
<td class="gt_row gt_right">3671.250</td>
</tr>
<tr>
<td class="gt_row gt_center">Dream</td>
<td class="gt_row gt_center">2008</td>
<td class="gt_row gt_right">38.19375</td>
<td class="gt_row gt_right">18.33750</td>
<td class="gt_row gt_right">192.0000</td>
<td class="gt_row gt_right">3756.250</td>
</tr>
<tr>
<td class="gt_row gt_center">Dream</td>
<td class="gt_row gt_center">2009</td>
<td class="gt_row gt_right">38.15000</td>
<td class="gt_row gt_right">17.74500</td>
<td class="gt_row gt_right">191.1500</td>
<td class="gt_row gt_right">3651.250</td>
</tr>
<tr>
<td class="gt_row gt_center">Torgersen</td>
<td class="gt_row gt_center">2007</td>
<td class="gt_row gt_right">38.80000</td>
<td class="gt_row gt_right">19.02105</td>
<td class="gt_row gt_right">189.2632</td>
<td class="gt_row gt_right">3763.158</td>
</tr>
<tr>
<td class="gt_row gt_center">Torgersen</td>
<td class="gt_row gt_center">2008</td>
<td class="gt_row gt_right">38.76875</td>
<td class="gt_row gt_right">18.11875</td>
<td class="gt_row gt_right">191.7500</td>
<td class="gt_row gt_right">3856.250</td>
</tr>
<tr>
<td class="gt_row gt_center">Torgersen</td>
<td class="gt_row gt_center">2009</td>
<td class="gt_row gt_right">39.31250</td>
<td class="gt_row gt_right">18.03750</td>
<td class="gt_row gt_right">192.9375</td>
<td class="gt_row gt_right">3489.062</td>
</tr>
<tr class="gt_group_heading_row">
<td colspan="6" class="gt_group_heading">Chinstrap</td>
</tr>
<tr class="gt_row_group_first">
<td class="gt_row gt_center">Dream</td>
<td class="gt_row gt_center">2007</td>
<td class="gt_row gt_right">48.72308</td>
<td class="gt_row gt_right">18.48462</td>
<td class="gt_row gt_right">192.4231</td>
<td class="gt_row gt_right">3694.231</td>
</tr>
<tr>
<td class="gt_row gt_center">Dream</td>
<td class="gt_row gt_center">2008</td>
<td class="gt_row gt_right">48.70000</td>
<td class="gt_row gt_right">18.45000</td>
<td class="gt_row gt_right">197.7222</td>
<td class="gt_row gt_right">3800.000</td>
</tr>
<tr>
<td class="gt_row gt_center">Dream</td>
<td class="gt_row gt_center">2009</td>
<td class="gt_row gt_right">49.05417</td>
<td class="gt_row gt_right">18.32917</td>
<td class="gt_row gt_right">198.0833</td>
<td class="gt_row gt_right">3725.000</td>
</tr>
<tr class="gt_group_heading_row">