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Post release tasks
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Ben Jeffery authored and mergify[bot] committed Jun 25, 2024
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21 changes: 13 additions & 8 deletions python/CHANGELOG.rst
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--------------------
[0.5.7] - 2023-XX-XX
[0.5.8] - 2024-XX-XX
--------------------

**Breaking Changes**

- The VCF writing methods (`ts.write_vcf`, `ts.as_vcf`) now error if a site with
position zero is encountered. The VCF spec does not allow zero position sites.
Suppress this error with the `allow_position_zero` argument.
(:user:`benjeffery`, :pr:`2901`, :issue:`2838`)

**Features**

- Add ``TreeSequence.extend_edges`` method that extends ancestral haplotypes
Expand All @@ -18,6 +11,18 @@
- Add ``Table.drop_metadata`` to make clearing metadata from tables easy.
(:user:`jeromekelleher`, :pr:`2944`)


--------------------
[0.5.7] - 2024-06-17
--------------------

**Breaking Changes**

- The VCF writing methods (`ts.write_vcf`, `ts.as_vcf`) now error if a site with
position zero is encountered. The VCF spec does not allow zero position sites.
Suppress this error with the `allow_position_zero` argument.
(:user:`benjeffery`, :pr:`2901`, :issue:`2838`)

**Bugfixes**

- Fix to the folded, expected allele frequency spectrum (i.e.,
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2 changes: 1 addition & 1 deletion python/tskit/_version.py
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# Definitive location for the version number.
# During development, should be x.y.z.devN
# For beta should be x.y.zbN
tskit_version = "0.5.7.dev0"
tskit_version = "0.5.8.dev0"

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