From 8057f2de75ce5a222d2fff27cb25138ba4aac1ef Mon Sep 17 00:00:00 2001
From: Rob Patro <rob@newton>
Date: Sat, 17 Aug 2024 14:21:16 -0400
Subject: [PATCH] change def of supplementary

---
 src/lib.rs | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/lib.rs b/src/lib.rs
index ebd2b79..fe75b6f 100644
--- a/src/lib.rs
+++ b/src/lib.rs
@@ -887,7 +887,7 @@ impl Aligner {
                         (*((*(self.idx.unwrap())).seq.offset(reg.rid as isize))).name;
 
                     let is_primary = reg.parent == reg.id;
-                    let is_supplementary = (reg.parent == reg.id && !reg.sam_pri());
+                    let is_supplementary = (reg.parent == reg.id) && (reg.sam_pri() == 0);
 
                     // todo holy heck this code is ugly
                     let alignment = if !reg.p.is_null() {