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GiottoVisuals

Version Lifecycle: experimental codecov R-CMD-check GitHub issues GitHub pulls

GiottoVisuals contains the main plotting functions of Giotto Suite

Installation

You can install GiottoVisuals like:

library(remotes)
install_github('drieslab/GiottoVisuals')

Script Organization by Prefixes:

aux_ - auxilliary and meta functionality

  • aux_output.R - plot output handling
  • aux_save.R - plot saving
  • aux_defaults.R - set plotting defaults
  • aux_visuals.R - general auxilliary plotting functions

plot_ - general plotting functions organized by type of plot

  • plot_scatter.R - scatter plots
  • plot_violin.R - violin plots
  • plot_heatmap.R - heatmaps
  • plot_dendrogram.R - dendrograms

vis_ - specific plotting functions organized by topic - vis_hvf.R - highly variable features plots

  • vis_pc.R - principle components plots
  • vis_spatial.R - - vis_spatial_in_situ.R -

gg_ - ggplot2 related

  • gg_info_layers.R - modular internals for plotting the different layers of information
  • ``

Other:

  • color_palettes.R - color palettes and factory functions

  • vis_spatialDE.R -

Package:

  • package_imports.R - all imports
  • globals.R - global variables
  • dd.R - dummy documentation for inheriting
  • zzz.R - onloads