From 005aaf5cf30385c0c43ceaf7969d401da1d96090 Mon Sep 17 00:00:00 2001
From: jiajic <72078254+jiajic@users.noreply.github.com>
Date: Thu, 9 Nov 2023 13:07:37 -0500
Subject: [PATCH] code cleanup

version bump
-export code needed in other modules
---
 DESCRIPTION                 |  2 +-
 NAMESPACE                   |  4 ++++
 R/aux_visuals.R             | 10 +++++-----
 man/plotly_axis_scale_2D.Rd |  1 -
 man/plotly_axis_scale_3D.Rd |  1 -
 man/plotly_grid.Rd          |  1 -
 man/plotly_network.Rd       |  3 +--
 7 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index aa9f7fd..213f624 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: GiottoVisuals
 Title: Visuals for the Giotto spatial biology analysis ecosystem
-Version: 0.0.0.9005
+Version: 0.0.0.9006
 Authors@R: c(
 	person("Ruben", "Dries", email = "rubendries@gmail.com",
 		 role = c("aut", "cre")),
diff --git a/NAMESPACE b/NAMESPACE
index 074f6e2..7603471 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -34,6 +34,10 @@ export(plotUMAP)
 export(plotUMAP_2D)
 export(plotUMAP_3D)
 export(plot_output_handler)
+export(plotly_axis_scale_2D)
+export(plotly_axis_scale_3D)
+export(plotly_grid)
+export(plotly_network)
 export(sankeyLabel)
 export(sankeySet)
 export(sankeySetAddresses)
diff --git a/R/aux_visuals.R b/R/aux_visuals.R
index d72b49b..f106002 100644
--- a/R/aux_visuals.R
+++ b/R/aux_visuals.R
@@ -196,8 +196,8 @@ mid_rescaler <- function(mid) {
 #' @param y_end default to "sdimy_end"
 #' @param z_end default to "sdimz_end"
 #'
-#' @return edges in network as data.table()
-#' @keywords internal
+#' @return edges in network as data.table
+#' @export
 plotly_network <- function(network,
                            x = "sdimx_begin",
                            y = "sdimy_begin",
@@ -238,7 +238,7 @@ plotly_network <- function(network,
 #' @param spatial_grid spatial_grid in giotto object
 #'
 #' @return edges in spatial grid as data.table()
-#' @keywords internal
+#' @export
 plotly_grid <- function(spatial_grid,
                         x_start = "x_start",
                         y_start = "y_start",
@@ -281,7 +281,7 @@ plotly_grid <- function(spatial_grid,
 #' @param mode axis adjustment mode
 #' @param custom_ratio set the ratio artificially
 #' @return edges in spatial grid as data.table()
-#' @keywords internal
+#' @export
 plotly_axis_scale_3D <- function(cell_locations,
                                  sdimx = NULL,
                                  sdimy = NULL,
@@ -328,7 +328,7 @@ plotly_axis_scale_3D <- function(cell_locations,
 #' @param mode axis adjustment mode
 #' @param custom_ratio set the ratio artificially
 #' @return edges in spatial grid as data.table()
-#' @keywords internal
+#' @export
 plotly_axis_scale_2D <- function(cell_locations,
                                  sdimx = NULL,
                                  sdimy = NULL,
diff --git a/man/plotly_axis_scale_2D.Rd b/man/plotly_axis_scale_2D.Rd
index a041dde..8ea3308 100644
--- a/man/plotly_axis_scale_2D.Rd
+++ b/man/plotly_axis_scale_2D.Rd
@@ -29,4 +29,3 @@ edges in spatial grid as data.table()
 \description{
 adjust the axis scale in 2D plotly plot
 }
-\keyword{internal}
diff --git a/man/plotly_axis_scale_3D.Rd b/man/plotly_axis_scale_3D.Rd
index c3f42aa..03abe84 100644
--- a/man/plotly_axis_scale_3D.Rd
+++ b/man/plotly_axis_scale_3D.Rd
@@ -32,4 +32,3 @@ edges in spatial grid as data.table()
 \description{
 adjust the axis scale in 3D plotly plot
 }
-\keyword{internal}
diff --git a/man/plotly_grid.Rd b/man/plotly_grid.Rd
index 5a879f0..c7cd332 100644
--- a/man/plotly_grid.Rd
+++ b/man/plotly_grid.Rd
@@ -29,4 +29,3 @@ edges in spatial grid as data.table()
 \description{
 provide grid segment to draw in plot_ly()
 }
-\keyword{internal}
diff --git a/man/plotly_network.Rd b/man/plotly_network.Rd
index 03b80c0..e02301b 100644
--- a/man/plotly_network.Rd
+++ b/man/plotly_network.Rd
@@ -30,9 +30,8 @@ plotly_network(
 \item{z_end}{default to "sdimz_end"}
 }
 \value{
-edges in network as data.table()
+edges in network as data.table
 }
 \description{
 provide network segment to draw in 3D plot_ly()
 }
-\keyword{internal}