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Schedule for Single-cell RNA-seq workshop

Day 1

Time Topic Instructor
09:00 - 09:15 Workshop introduction Radhika
09:15 - 09:45 Introduction to scRNA-seq Mary
09:45 - 10:30 Single-cell RNA-seq design and methods Dr. Sarah Boswell
10:30 - 10:45 Break
10:45 - 11:30 Single-cell RNA-seq design and methods (cont.) Dr. Sarah Boswell
11:30 - 12:00 Raw data to count matrix Mary
12:00 - 13:00 Lunch
13:00 - 13:45 R Refresher Radhika
13:45 - 14:45 Quality control set-up Jihe
14:45 - 15:00 Break
15:00 - 16:30 Quality control Mary

Day 2

Time Topic Instructor
09:00 - 09:45 Theory of Normalization and PCA Radhika
09:45 - 10:45 Normalization and Integration Mary
10:45 - 11:00 Break
11:00 - 11:45 Normalization and Integration Mary
11:45 - 12:45 Clustering Radhika
12:45 - 13:45 Lunch
13:45 - 15:00 Clustering quality control Mary
15:00 - 15:15 Break
15:15 - 16:45 Marker identification Jihe
16:45 - 17:00 Wrap up Radhika