PineChrom -- ATAC-Seq analysis pipeline

Pipeline for chromatin analysis using ATAC-Seq, a pipeline to analyze ATAC-Seq data.

What you will find in this folder

• Core_manuscript -- folder containing our project with Core on the technical aspects of ATAC using K562 material (fresh, frozen, fixed cells).
• macs2_diff -- analyzing macs2 bdgdiff and how it performs on ATAC data
• Minutes_jknight_meeting -- minutes of our ATAC Tuesday meetings with Julian, Anna, Alicia and Irina
• git_slides_irina.pdf -- Irina's slides on how to use Git
• psoriasis_ATACseq_folder_README.md -- Alicia's project description from Jan 19 2016

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designed by I. Pulyakhina