diff --git a/man/camtrapR-package.Rd b/man/camtrapR-package.Rd index 4d24bc0..410e8e2 100644 --- a/man/camtrapR-package.Rd +++ b/man/camtrapR-package.Rd @@ -119,10 +119,10 @@ These plots are generated from the record table and the camera trap table. \tabular{ll}{ -\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr1.html}{1. Organising raw camera trap images} \cr -\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr2.html}{2. Identifying species and individuals} \cr -\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr3.html}{3. Extracting Data from Camera Trapping Images and Videos} \cr -\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr4.html}{4. Data exploration and visualisation} \cr +\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr1.pdf}{1. Organising raw camera trap images} \cr +\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr2.pdf}{2. Identifying species and individuals} \cr +\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr3.pdf}{3. Extracting Data from Camera Trapping Images and Videos} \cr +\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr4.pdf}{4. Data exploration and visualisation} \cr \href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr5.html}{5. Multi-species occupancy models} \cr } diff --git a/man/detectionHistory.Rd b/man/detectionHistory.Rd index 157449f..b981ee2 100644 --- a/man/detectionHistory.Rd +++ b/man/detectionHistory.Rd @@ -174,7 +174,7 @@ counts as input. Please note the section about defining argument \code{timeZone} in the vignette on data extraction (accessible via \code{vignette("DataExtraction")} or online -(\url{https://cran.r-project.org/package=camtrapR/vignettes/camtrapr3.html})). +(\url{https://cran.r-project.org/package=camtrapR/vignettes/camtrapr3.pdf})). } \examples{ diff --git a/man/recordTable.Rd b/man/recordTable.Rd index 88e6086..9bd78fd 100644 --- a/man/recordTable.Rd +++ b/man/recordTable.Rd @@ -209,7 +209,7 @@ independence): Custom image metadata must be organised hierarchically (tag group - tag; e.g. "Species" - "Leopard Cat"). Detailed information on how to set up and use metadata tags can be found in -\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr2.html#metadata-tagging}{vignette +\href{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr2.pdf}{vignette 2: Species and Individual Identification}. Custom image metadata tags must be written to the images. The function @@ -220,7 +220,7 @@ make sure "Write to sidecar files" is unchecked. Please note the section about defining argument \code{timeZone} in the vignette on data extraction (accessible via \code{vignette("DataExtraction")} or online -(\url{https://cran.r-project.org/package=camtrapR/vignettes/camtrapr3.html})). +(\url{https://cran.r-project.org/package=camtrapR/vignettes/camtrapr3.pdf})). } \examples{ diff --git a/man/recordTableIndividual.Rd b/man/recordTableIndividual.Rd index 2bec7e6..ce3df59 100644 --- a/man/recordTableIndividual.Rd +++ b/man/recordTableIndividual.Rd @@ -194,7 +194,7 @@ See the example below for for how to specify the argument \code{video}. \section{Warning }{ Be sure to read the section on individual identification in the package vignette -(\url{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr2.html}). +(\url{https://CRAN.R-project.org/package=camtrapR/vignettes/camtrapr2.pdf}). Af you use image metadata tags for identification, the tags must be written to the image metadata. The function cannot read tags from .xmp sidecar @@ -205,7 +205,7 @@ make sure "Write to sidecar files" is unchecked. Please note the section about defining argument \code{timeZone} in the vignette on data extraction (accessible via \code{vignette("DataExtraction")} or online -(\url{https://cran.r-project.org/package=camtrapR/vignettes/camtrapr3.html})). +(\url{https://cran.r-project.org/package=camtrapR/vignettes/camtrapr3.pdf})). } \examples{ diff --git a/man/spatialDetectionHistory.Rd b/man/spatialDetectionHistory.Rd index 8ca820d..ccb1f4d 100644 --- a/man/spatialDetectionHistory.Rd +++ b/man/spatialDetectionHistory.Rd @@ -207,7 +207,7 @@ and time formats in R see \code{\link[base]{strptime}} or Please note the section about defining argument \code{timeZone} in the vignette on data extraction (accessible via \code{vignette("DataExtraction")} or online -(\url{https://cran.r-project.org/package=camtrapR/vignettes/camtrapr3.html})). +(\url{https://cran.r-project.org/package=camtrapR/vignettes/camtrapr3.pdf})). } \examples{