diff --git a/dev/site_upgrade.R b/dev/site_upgrade.R index 4c51fe6..a1fa9f4 100644 --- a/dev/site_upgrade.R +++ b/dev/site_upgrade.R @@ -4,7 +4,7 @@ Sys.setenv(COPASI_LIB_PATH = normalizePath(file.path("libs", .Platform$r_arch, p # use specific pkgdown to keep page stable for now remotes::install_version("pkgdown", "2.0.7", upgrade = "never") # use fixed plotly versions to be able to keep the 8mb or so of plots frozen when updating the rest of the website -remotes::install_version("ggplot2", "3.4.0", upgrade = "never") +remotes::install_version("ggplot2", "3.4.1", upgrade = "never") remotes::install_version("plotly", "4.10.1", upgrade = "never") devtools::document() # Pkgdown and the parallel cluster used in the examples vignette needs to have CoRC installed diff --git a/docs/404.html b/docs/404.html index 9aea06c..d727056 100644 --- a/docs/404.html +++ b/docs/404.html @@ -41,7 +41,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index e25d28e..92372ff 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/articles/CoRC.html b/docs/articles/CoRC.html index d26ab71..5a3fab4 100644 --- a/docs/articles/CoRC.html +++ b/docs/articles/CoRC.html @@ -42,7 +42,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/articles/CoRC_files/figure-html/unnamed-chunk-11-1.png b/docs/articles/CoRC_files/figure-html/unnamed-chunk-11-1.png index c4e2155..5bf2d16 100644 Binary files a/docs/articles/CoRC_files/figure-html/unnamed-chunk-11-1.png and b/docs/articles/CoRC_files/figure-html/unnamed-chunk-11-1.png differ diff --git a/docs/articles/entity_management.html b/docs/articles/entity_management.html index b3a99d3..d7f0cbc 100644 --- a/docs/articles/entity_management.html +++ b/docs/articles/entity_management.html @@ -42,7 +42,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/articles/examples.html b/docs/articles/examples.html index 9731890..eeadb3c 100644 --- a/docs/articles/examples.html +++ b/docs/articles/examples.html @@ -42,7 +42,7 @@ CoRC - 0.11.1 + 0.12.0 @@ -192,10 +192,10 @@

3D Trajectory Plot of a Calcium Mo plots$deterministic
- + plots$stochastic
- +

Statistics of Repeated Stochastic Simulations @@ -234,7 +234,7 @@

Statistics of Repeated St # Combine all results and reshape the data plotdata <- timeseries %>% - bind_rows() %>% + bind_rows() %>% group_by(Time) %>% # calculate mean and sd for all time points summarise(across(everything(), list(mean = mean, sd = sd)), .groups = "drop") %>% @@ -271,7 +271,7 @@

Statistics of Repeated St plotly::ggplotly(plot, tooltip = c("group", "x", "y", "tt_sd"))

- +

Parameter Scan @@ -343,7 +343,7 @@

plotly::ggplotly(plot)

- +

2D Scan over Random Concentrations of Two Species @@ -398,7 +398,7 @@

2D Scan over Random Co # Combine all results and reshape the data plotdata <- scan %>% - bind_rows() %>% + bind_rows() %>% pivot_longer(c(CGS, TS), names_to = "reaction", values_to = "flux") plot <- @@ -414,7 +414,7 @@

2D Scan over Random Co plotly::ggplotly(plot, tooltip = c("tt_cys", "x", "y"))

- +
@@ -508,30 +508,30 @@

Parameter Estimation#> # A tibble: 2 × 5 #> fitted_value objective_value root_mean_square error_mean error_mean_std_devi…¹ #> <chr> <dbl> <dbl> <dbl> <dbl> -#> 1 [Mos-P] 0.0407 0.0638 -0.0141 0.0622 -#> 2 [Erk2-P] 0.0192 0.0438 0.00403 0.0436 +#> 1 [Mos-P] 0.0406 0.0637 -0.0137 0.0622 +#> 2 [Erk2-P] 0.0192 0.0438 0.00386 0.0436 #> # … with abbreviated variable name ¹​error_mean_std_deviation result$parameters #> # A tibble: 6 × 8 #> parameter lower…¹ start…² value upper…³ std_d…⁴ coeff…⁵ gradient #> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> -#> 1 (MAPKKK activation).V1 0.25 2.5 2.41 4.75 0.140 5.78 0.00580 -#> 2 (MAPKKK inactivation).… 0.025 0.25 0.243 0.475 0.00830 3.42 0.148 -#> 3 (dephosphorylation of … 0.075 0.75 0.729 1.42 0.104 14.3 0.0120 -#> 4 (dephosphorylation of … 0.075 0.75 1.42 1.42 0.491 34.4 -0.0314 -#> 5 (dephosphorylation of … 0.05 0.5 0.765 0.95 0.0821 10.7 -0.0147 -#> 6 (dephosphorylation of … 0.05 0.5 0.778 0.95 0.104 13.4 -0.0166 +#> 1 (MAPKKK activation).V1 0.25 2.5 2.41 4.75 0.139 5.78 0.00535 +#> 2 (MAPKKK inactivation).… 0.025 0.25 0.243 0.475 0.00827 3.41 0.129 +#> 3 (dephosphorylation of … 0.075 0.75 0.729 1.42 0.104 14.3 0.0145 +#> 4 (dephosphorylation of … 0.075 0.75 1.42 1.42 0.490 34.4 -0.0300 +#> 5 (dephosphorylation of … 0.05 0.5 0.768 0.95 0.0822 10.7 -0.0164 +#> 6 (dephosphorylation of … 0.05 0.5 0.781 0.95 0.104 13.3 -0.0115 #> # … with abbreviated variable names ¹​lower_bound, ²​start_value, ³​upper_bound, #> # ⁴​std_deviation, ⁵​coeff_of_variation str_trunc(result$protocol, width = 800, side = "center") -#> [1] "2023-01-28T23:09:11: Levenberg-Marquardt algorithm started\nFor more information about this method see: http://copasi.org/Support/User_Manual/Methods/Optimization_Methods/Levenberg_-_Marquardt/\n\n2023-01-28T23:09:11: niter=0, f=0.133375, fbest=0.362073\nposition: x[0]=2.5002 x[1]=0.250512 x[2]=0.79622 x[3]=1.27723 x[4]=0.510028 x[5]=0.530554 \n\n2023-01-28T23:09:11: niter=1, f=0.101663, fbest=0.133375..., fbest=0.0598679\nposition: x[0]=2.41289 x[1]=0.242746 x[2]=0.72893 x[3]=1.42464 x[4]=0.76497 x[5]=0.777514 \n\n2023-01-28T23:09:11: Iteration 54: Objective function value and parameter change lower than tolerance (3/3). Terminating.\n\n2023-01-28T23:09:11: Algorithm reached the edge of the parameter domain 74 times.\n\n2023-01-28T23:09:11: Algorithm finished.\nTerminated after 55 of 2000 iterations.\n\n" +#> [1] "2023-03-12T23:40:45: Levenberg-Marquardt algorithm started\nFor more information about this method see: http://copasi.org/Support/User_Manual/Methods/Optimization_Methods/Levenberg_-_Marquardt/\n\n2023-03-12T23:40:45: niter=0, f=0.133375, fbest=0.362073\nposition: x[0]=2.5002 x[1]=0.250512 x[2]=0.79622 x[3]=1.27724 x[4]=0.510028 x[5]=0.530554 \n\n2023-03-12T23:40:45: niter=1, f=0.101663, fbest=0.133375...\n\n2023-03-12T23:40:45: niter=63, f=0.0597327, fbest=0.0597327\nposition: x[0]=2.41151 x[1]=0.242629 x[2]=0.728742 x[3]=1.425 x[4]=0.767878 x[5]=0.780763 \n\n2023-03-12T23:40:45: Iteration 63: Lambda reached maximal value. Terminating.\n\n2023-03-12T23:40:45: Algorithm reached the edge of the parameter domain 90 times.\n\n2023-03-12T23:40:45: Algorithm finished.\nTerminated after 64 of 2000 iterations.\n\n" plotly::ggplotly(plots$`Erk2-P`)

- + plotly::ggplotly(plots$`Mos-P`)
- + diff --git a/docs/articles/index.html b/docs/articles/index.html index 25f0589..9efecb8 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/articles/issues.html b/docs/articles/issues.html index 76b1190..e57ed92 100644 --- a/docs/articles/issues.html +++ b/docs/articles/issues.html @@ -42,7 +42,7 @@ CoRC - 0.11.1 + 0.12.0 @@ -165,7 +165,7 @@

Saving .cps loses experimental data # Load example which has experimental data. datamodel <- loadExamples(4)[[1]] -fitproblem <- as(datamodel$getTask("Parameter Estimation")$getProblem(), "_p_CFitProblem") +fitproblem <- as(datamodel$getTask("Parameter Estimation")$getProblem(), "_p_CFitProblem") filenames <- fitproblem$getExperimentSet()$getFileNames()

The filenames are in the correct folder.

@@ -180,7 +180,7 @@ 
Saving .cps loses experimental data
 unloadModel()
 
 datamodel <- loadModel(file)
-fitproblem <- as(datamodel$getTask("Parameter Estimation")$getProblem(), "_p_CFitProblem")
+fitproblem <- as(datamodel$getTask("Parameter Estimation")$getProblem(), "_p_CFitProblem")
 filenames <- fitproblem$getExperimentSet()$getFileNames()

The filenames are now supposedly in the folder where the .cps was saved but there they don’t exist.

diff --git a/docs/articles/model_building.html b/docs/articles/model_building.html index 2d8f13e..ae1a09e 100644 --- a/docs/articles/model_building.html +++ b/docs/articles/model_building.html @@ -42,7 +42,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/articles/model_building_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/model_building_files/figure-html/unnamed-chunk-3-1.png index 100f2d1..f8e5d73 100644 Binary files a/docs/articles/model_building_files/figure-html/unnamed-chunk-3-1.png and b/docs/articles/model_building_files/figure-html/unnamed-chunk-3-1.png differ diff --git a/docs/articles/model_building_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/model_building_files/figure-html/unnamed-chunk-4-1.png index 0a78050..8d7c0fc 100644 Binary files a/docs/articles/model_building_files/figure-html/unnamed-chunk-4-1.png and b/docs/articles/model_building_files/figure-html/unnamed-chunk-4-1.png differ diff --git a/docs/articles/task_management.html b/docs/articles/task_management.html index 6fced78..acf5cf3 100644 --- a/docs/articles/task_management.html +++ b/docs/articles/task_management.html @@ -42,7 +42,7 @@ CoRC - 0.11.1 + 0.12.0 @@ -212,10 +212,10 @@

Task functions#> ..$ T2 : num [1:10001] 0.00 3.54e-08 1.42e-07 3.18e-07 5.66e-07 ... #> ..$ CheBp : num [1:10001] 0.00 6.19e-08 2.73e-07 6.33e-07 1.14e-06 ... #> ..$ T4 : num [1:10001] 0.00 3.94e-17 6.30e-16 3.19e-15 1.01e-14 ... +#> ..$ CheAp : num [1:10001] 0.00 1.63e-05 3.44e-05 5.25e-05 7.06e-05 ... #> ..$ CheB : num [1:10001] 0.28 0.28 0.28 0.28 0.28 ... -#> ..$ CheYp : num [1:10001] 0 0.000052 0.000173 0.000316 0.000467 ... #> ..$ T0 : num [1:10001] 5.3 5.3 5.3 5.3 5.3 ... -#> ..$ CheAp : num [1:10001] 0.00 1.63e-05 3.44e-05 5.25e-05 7.06e-05 ... +#> ..$ CheYp : num [1:10001] 0 0.000052 0.000173 0.000316 0.000467 ... #> ..$ Tactive : num [1:10001] 0.00 6.64e-05 1.33e-04 1.99e-04 2.66e-04 ... #> ..$ Tactive0: num [1:10001] 0 0 0 0 0 0 0 0 0 0 ... #> ..$ Tactive1: num [1:10001] 0.00 6.64e-05 1.33e-04 1.99e-04 2.65e-04 ... @@ -232,10 +232,10 @@

Task functions#> ..$ T2 : num [1:10001] 0.00 2.98e-05 1.19e-04 2.69e-04 4.77e-04 ... #> ..$ CheBp : num [1:10001] 0.00 5.21e-05 2.30e-04 5.34e-04 9.63e-04 ... #> ..$ T4 : num [1:10001] 0.00 3.32e-14 5.31e-13 2.69e-12 8.50e-12 ... +#> ..$ CheAp : num [1:10001] 0 0.0137 0.029 0.0443 0.0596 ... #> ..$ CheB : num [1:10001] 236 236 236 236 236 ... -#> ..$ CheYp : num [1:10001] 0 0.0439 0.1457 0.2667 0.3938 ... #> ..$ T0 : num [1:10001] 4468 4468 4467 4467 4466 ... -#> ..$ CheAp : num [1:10001] 0 0.0137 0.029 0.0443 0.0596 ... +#> ..$ CheYp : num [1:10001] 0 0.0439 0.1457 0.2667 0.3938 ... #> ..$ Tactive : num [1:10001] 0 0.056 0.112 0.168 0.224 ... #> ..$ Tactive0: num [1:10001] 0 0 0 0 0 0 0 0 0 0 ... #> ..$ Tactive1: num [1:10001] 0 0.056 0.112 0.168 0.224 ... @@ -323,10 +323,10 @@

Task execution#> ..$ T2 : num [1:10001] 0.00 3.54e-10 1.42e-09 3.19e-09 5.66e-09 ... #> ..$ CheBp : num [1:10001] 0.00 1.96e-10 1.29e-09 3.67e-09 7.48e-09 ... #> ..$ T4 : num [1:10001] 0.00 3.94e-21 6.30e-20 3.19e-19 1.01e-18 ... +#> ..$ CheAp : num [1:10001] 0.00 6.52e-07 2.03e-06 3.67e-06 5.42e-06 ... #> ..$ CheB : num [1:10001] 0.28 0.28 0.28 0.28 0.28 ... -#> ..$ CheYp : num [1:10001] 0.00 2.20e-07 1.40e-06 3.87e-06 7.63e-06 ... #> ..$ T0 : num [1:10001] 5.3 5.3 5.3 5.3 5.3 ... -#> ..$ CheAp : num [1:10001] 0.00 6.52e-07 2.03e-06 3.67e-06 5.42e-06 ... +#> ..$ CheYp : num [1:10001] 0.00 2.20e-07 1.40e-06 3.87e-06 7.63e-06 ... #> ..$ Tactive : num [1:10001] 0.00 6.64e-06 1.33e-05 1.99e-05 2.66e-05 ... #> ..$ Tactive0: num [1:10001] 0 0 0 0 0 0 0 0 0 0 ... #> ..$ Tactive1: num [1:10001] 0.00 6.64e-06 1.33e-05 1.99e-05 2.66e-05 ... @@ -343,10 +343,10 @@

Task execution#> ..$ T2 : num [1:10001] 0.00 2.98e-07 1.19e-06 2.69e-06 4.77e-06 ... #> ..$ CheBp : num [1:10001] 0.00 1.66e-07 1.09e-06 3.09e-06 6.30e-06 ... #> ..$ T4 : num [1:10001] 0.00 3.32e-18 5.32e-17 2.69e-16 8.50e-16 ... +#> ..$ CheAp : num [1:10001] 0 0.00055 0.00171 0.00309 0.00457 ... #> ..$ CheB : num [1:10001] 236 236 236 236 236 ... -#> ..$ CheYp : num [1:10001] 0 0.000186 0.001184 0.003259 0.00643 ... #> ..$ T0 : num [1:10001] 4468 4468 4468 4468 4468 ... -#> ..$ CheAp : num [1:10001] 0 0.00055 0.00171 0.00309 0.00457 ... +#> ..$ CheYp : num [1:10001] 0 0.000186 0.001184 0.003259 0.00643 ... #> ..$ Tactive : num [1:10001] 0 0.0056 0.0112 0.0168 0.0224 ... #> ..$ Tactive0: num [1:10001] 0 0 0 0 0 0 0 0 0 0 ... #> ..$ Tactive1: num [1:10001] 0 0.0056 0.0112 0.0168 0.0224 ... @@ -382,8 +382,8 @@

Task execution#> ..$ type : chr [1:11] "reactions" "reactions" "reactions" "reactions" ... #> ..$ concentration : num [1:11] 5.185 0.115 0.2082 0.0718 8.8118 ... #> ..$ number : num [1:11] 4371.5 97 175.5 60.6 7429.2 ... -#> ..$ rate : num [1:11] 2.59e-13 -2.59e-13 -1.94e-16 1.94e-16 -1.90e-13 ... -#> ..$ number_rate : num [1:11] 2.18e-10 -2.18e-10 -1.63e-13 1.63e-13 -1.60e-10 ... +#> ..$ rate : num [1:11] 2.42e-13 -2.42e-13 -1.85e-16 1.85e-16 -1.90e-13 ... +#> ..$ number_rate : num [1:11] 2.04e-10 -2.04e-10 -1.56e-13 1.56e-13 -1.60e-10 ... #> ..$ transition_time: num [1:11] 0.05112 0.00113 2.89824 1 0.08695 ... #> $ compartments : tibble [0 × 5] (S3: tbl_df/tbl/data.frame) #> ..$ key : chr(0) @@ -410,7 +410,7 @@

Task execution#> ..- attr(*, "dimnames")=List of 2 #> .. ..$ : chr [1:7] "T1" "T3" "CheY" "CheA" ... #> .. ..$ : chr [1:7] "T1" "T3" "CheY" "CheA" ... -#> $ protocol : chr "Try Newton's method. \n Starting Newton Iterations...\n Newton step with damping. New value: Distance: 2.6"| __truncated__ +#> $ protocol : chr "Try Newton's method. \n Starting Newton Iterations...\n Newton step failed. Negative volume or concentrati"| __truncated__ diff --git a/docs/authors.html b/docs/authors.html index e5ecfc6..a53fbec 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/index.html b/docs/index.html index a83394f..e6042de 100644 --- a/docs/index.html +++ b/docs/index.html @@ -42,7 +42,7 @@ CoRC - 0.11.1 + 0.12.0 @@ -132,7 +132,7 @@

OverviewHandling of multiple models at once.
  • Parallelization on multi-core machines or computing clusters.
    • -

    It is currently based on COPASI version 4.34 Build (251) and aims to closely follow COPASI releases in the future.

    +

    It is currently based on COPASI version 4.39 Build (272) and aims to closely follow COPASI releases in the future.

    CoRC comes with the Artistic License 2.0. By using CoRC you agree to this license.

    diff --git a/docs/news/index.html b/docs/news/index.html index 2a861c5..b02a2b4 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0
    @@ -83,6 +83,15 @@

    Changelog

    Source: NEWS.md +
    +

    CoRC 0.12.0 (2023-03-12)

    +

    • Added support for macOS on ARM (aarch64)

      • +
    • +

      Rebased on COPASI release 4.39 sources.

      +

      Included a further fix to prevent a crashing bug in this version of COPASI

      +
      • +

    • Switched to using manylinux 2014 (up from 2010) for compilation of linux binaries

      • +

    CoRC 0.11.1 (2023-01-22)

    • Fixed errors due to breaking changes in package dependency ‘stringr’ version 1.5.0.

      • diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index dc1bb1d..b960758 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -8,7 +8,7 @@ articles: issues: issues.html model_building: model_building.html task_management: task_management.html -last_built: 2023-01-28T22:00Z +last_built: 2023-03-12T22:37Z urls: reference: https://jpahle.github.io/CoRC/reference article: https://jpahle.github.io/CoRC/articles diff --git a/docs/reference/CoRC-package.html b/docs/reference/CoRC-package.html index d3b7056..3a3a17e 100644 --- a/docs/reference/CoRC-package.html +++ b/docs/reference/CoRC-package.html @@ -20,7 +20,7 @@ CoRC - 0.11.1 + 0.12.0
    diff --git a/docs/reference/addExperiments.html b/docs/reference/addExperiments.html index 7c703c1..61060f7 100644 --- a/docs/reference/addExperiments.html +++ b/docs/reference/addExperiments.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/addOptimizationParameter.html b/docs/reference/addOptimizationParameter.html index 540bad0..4225421 100644 --- a/docs/reference/addOptimizationParameter.html +++ b/docs/reference/addOptimizationParameter.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/addParameterEstimationParameter.html b/docs/reference/addParameterEstimationParameter.html index 62bc2a3..f853dd7 100644 --- a/docs/reference/addParameterEstimationParameter.html +++ b/docs/reference/addParameterEstimationParameter.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/applyInitialState.html b/docs/reference/applyInitialState.html index dbc12e9..6c1a08d 100644 --- a/docs/reference/applyInitialState.html +++ b/docs/reference/applyInitialState.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/autoplot.copasi_ts.html b/docs/reference/autoplot.copasi_ts.html index e2b2824..2714304 100644 --- a/docs/reference/autoplot.copasi_ts.html +++ b/docs/reference/autoplot.copasi_ts.html @@ -18,7 +18,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/biomodels_url.html b/docs/reference/biomodels_url.html index f8858ce..5210f24 100644 --- a/docs/reference/biomodels_url.html +++ b/docs/reference/biomodels_url.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/clearCustomKineticFunctions.html b/docs/reference/clearCustomKineticFunctions.html index cd83f4a..2335077 100644 --- a/docs/reference/clearCustomKineticFunctions.html +++ b/docs/reference/clearCustomKineticFunctions.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/clearExperiments.html b/docs/reference/clearExperiments.html index 46cb9db..e88bd3f 100644 --- a/docs/reference/clearExperiments.html +++ b/docs/reference/clearExperiments.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/clearOptimizationParameters.html b/docs/reference/clearOptimizationParameters.html index 95a57ed..3160f7d 100644 --- a/docs/reference/clearOptimizationParameters.html +++ b/docs/reference/clearOptimizationParameters.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/clearParameterEstimationParameters.html b/docs/reference/clearParameterEstimationParameters.html index 864b5e5..188b735 100644 --- a/docs/reference/clearParameterEstimationParameters.html +++ b/docs/reference/clearParameterEstimationParameters.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/clearValidations.html b/docs/reference/clearValidations.html index 8df11e3..43c8093 100644 --- a/docs/reference/clearValidations.html +++ b/docs/reference/clearValidations.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/compileModel.html b/docs/reference/compileModel.html index 60dc988..23f9e6b 100644 --- a/docs/reference/compileModel.html +++ b/docs/reference/compileModel.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/convertToIrreversible.html b/docs/reference/convertToIrreversible.html index 83de6b3..da65528 100644 --- a/docs/reference/convertToIrreversible.html +++ b/docs/reference/convertToIrreversible.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/defineExperiments.html b/docs/reference/defineExperiments.html index 7ac7b84..12d5f00 100644 --- a/docs/reference/defineExperiments.html +++ b/docs/reference/defineExperiments.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/defineOptimizationParameter.html b/docs/reference/defineOptimizationParameter.html index 1a1c947..f141165 100644 --- a/docs/reference/defineOptimizationParameter.html +++ b/docs/reference/defineOptimizationParameter.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/defineParameterEstimationParameter.html b/docs/reference/defineParameterEstimationParameter.html index b51b6d8..372b4a2 100644 --- a/docs/reference/defineParameterEstimationParameter.html +++ b/docs/reference/defineParameterEstimationParameter.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/deleteCompartment.html b/docs/reference/deleteCompartment.html index d61b72b..bc73900 100644 --- a/docs/reference/deleteCompartment.html +++ b/docs/reference/deleteCompartment.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/deleteEvent.html b/docs/reference/deleteEvent.html index 496b470..a974234 100644 --- a/docs/reference/deleteEvent.html +++ b/docs/reference/deleteEvent.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/deleteGlobalQuantity.html b/docs/reference/deleteGlobalQuantity.html index a1178c9..f195da2 100644 --- a/docs/reference/deleteGlobalQuantity.html +++ b/docs/reference/deleteGlobalQuantity.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/deleteKineticFunction.html b/docs/reference/deleteKineticFunction.html index 9c88ebf..b6974b8 100644 --- a/docs/reference/deleteKineticFunction.html +++ b/docs/reference/deleteKineticFunction.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/deleteReaction.html b/docs/reference/deleteReaction.html index d213a29..ad5d8ef 100644 --- a/docs/reference/deleteReaction.html +++ b/docs/reference/deleteReaction.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/deleteSpecies.html b/docs/reference/deleteSpecies.html index 8246747..644aa3e 100644 --- a/docs/reference/deleteSpecies.html +++ b/docs/reference/deleteSpecies.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/entity_finders.html b/docs/reference/entity_finders.html index 95af549..02a2bab 100644 --- a/docs/reference/entity_finders.html +++ b/docs/reference/entity_finders.html @@ -19,7 +19,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getAreaUnit.html b/docs/reference/getAreaUnit.html index a236408..15d26f6 100644 --- a/docs/reference/getAreaUnit.html +++ b/docs/reference/getAreaUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getCompartmentReferences.html b/docs/reference/getCompartmentReferences.html index f3bde4d..498fb81 100644 --- a/docs/reference/getCompartmentReferences.html +++ b/docs/reference/getCompartmentReferences.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getCompartments.html b/docs/reference/getCompartments.html index 429003b..1ee753b 100644 --- a/docs/reference/getCompartments.html +++ b/docs/reference/getCompartments.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getCopasi-deprecated.html b/docs/reference/getCopasi-deprecated.html index 23ee594..bd62cb4 100644 --- a/docs/reference/getCopasi-deprecated.html +++ b/docs/reference/getCopasi-deprecated.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getCurrentModel.html b/docs/reference/getCurrentModel.html index 2e912c7..ab5241c 100644 --- a/docs/reference/getCurrentModel.html +++ b/docs/reference/getCurrentModel.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getEvents.html b/docs/reference/getEvents.html index 456138f..85502b9 100644 --- a/docs/reference/getEvents.html +++ b/docs/reference/getEvents.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getGlobalQuantities.html b/docs/reference/getGlobalQuantities.html index 5deffe9..0d40b93 100644 --- a/docs/reference/getGlobalQuantities.html +++ b/docs/reference/getGlobalQuantities.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getGlobalQuantityReferences.html b/docs/reference/getGlobalQuantityReferences.html index b26bc68..35b0e49 100644 --- a/docs/reference/getGlobalQuantityReferences.html +++ b/docs/reference/getGlobalQuantityReferences.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getInitialTime.html b/docs/reference/getInitialTime.html index bc7be0a..7fb878d 100644 --- a/docs/reference/getInitialTime.html +++ b/docs/reference/getInitialTime.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getInitialValue.html b/docs/reference/getInitialValue.html index f3855aa..6a57d83 100644 --- a/docs/reference/getInitialValue.html +++ b/docs/reference/getInitialValue.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getLengthUnit.html b/docs/reference/getLengthUnit.html index 6e5f6f0..6d5c2c8 100644 --- a/docs/reference/getLengthUnit.html +++ b/docs/reference/getLengthUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getLinearNoiseApproximationSettings.html b/docs/reference/getLinearNoiseApproximationSettings.html index a1a25a3..e8f6d8f 100644 --- a/docs/reference/getLinearNoiseApproximationSettings.html +++ b/docs/reference/getLinearNoiseApproximationSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getLinkMatrix.html b/docs/reference/getLinkMatrix.html index 3ddf6a7..1ca70e2 100644 --- a/docs/reference/getLinkMatrix.html +++ b/docs/reference/getLinkMatrix.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getLoadedModels.html b/docs/reference/getLoadedModels.html index 7ff1e54..9951790 100644 --- a/docs/reference/getLoadedModels.html +++ b/docs/reference/getLoadedModels.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getMetabolicControlAnalysisSettings.html b/docs/reference/getMetabolicControlAnalysisSettings.html index 5c6f61f..e5e6695 100644 --- a/docs/reference/getMetabolicControlAnalysisSettings.html +++ b/docs/reference/getMetabolicControlAnalysisSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getModelName.html b/docs/reference/getModelName.html index 4243db1..2c04999 100644 --- a/docs/reference/getModelName.html +++ b/docs/reference/getModelName.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getOptimizationSettings.html b/docs/reference/getOptimizationSettings.html index 57fb98d..d42a129 100644 --- a/docs/reference/getOptimizationSettings.html +++ b/docs/reference/getOptimizationSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getParameterEstimationSettings.html b/docs/reference/getParameterEstimationSettings.html index 7d3049f..02eb1d6 100644 --- a/docs/reference/getParameterEstimationSettings.html +++ b/docs/reference/getParameterEstimationSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getParameterReferences.html b/docs/reference/getParameterReferences.html index f2c75fa..102270b 100644 --- a/docs/reference/getParameterReferences.html +++ b/docs/reference/getParameterReferences.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getParameters.html b/docs/reference/getParameters.html index 26a53a0..b3d5207 100644 --- a/docs/reference/getParameters.html +++ b/docs/reference/getParameters.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getQuantityUnit.html b/docs/reference/getQuantityUnit.html index ace2895..33fcd7a 100644 --- a/docs/reference/getQuantityUnit.html +++ b/docs/reference/getQuantityUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getReactionMappings.html b/docs/reference/getReactionMappings.html index 86ebdf5..b9e34e1 100644 --- a/docs/reference/getReactionMappings.html +++ b/docs/reference/getReactionMappings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getReactionReferences.html b/docs/reference/getReactionReferences.html index 13e722d..3dbeb8c 100644 --- a/docs/reference/getReactionReferences.html +++ b/docs/reference/getReactionReferences.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getReactions.html b/docs/reference/getReactions.html index 1816ef9..16fb15e 100644 --- a/docs/reference/getReactions.html +++ b/docs/reference/getReactions.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getReducedStoichiometryMatrix.html b/docs/reference/getReducedStoichiometryMatrix.html index 2352156..b65d5af 100644 --- a/docs/reference/getReducedStoichiometryMatrix.html +++ b/docs/reference/getReducedStoichiometryMatrix.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getSpecies.html b/docs/reference/getSpecies.html index ea2fa58..27acdb3 100644 --- a/docs/reference/getSpecies.html +++ b/docs/reference/getSpecies.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getSpeciesReferences.html b/docs/reference/getSpeciesReferences.html index 877671f..52a4234 100644 --- a/docs/reference/getSpeciesReferences.html +++ b/docs/reference/getSpeciesReferences.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getSteadyStateSettings.html b/docs/reference/getSteadyStateSettings.html index a8106d5..4f2a934 100644 --- a/docs/reference/getSteadyStateSettings.html +++ b/docs/reference/getSteadyStateSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getStoichiometryMatrix.html b/docs/reference/getStoichiometryMatrix.html index 213c134..49f7175 100644 --- a/docs/reference/getStoichiometryMatrix.html +++ b/docs/reference/getStoichiometryMatrix.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getTimeCourseSettings.html b/docs/reference/getTimeCourseSettings.html index ce72d2e..cfc69d4 100644 --- a/docs/reference/getTimeCourseSettings.html +++ b/docs/reference/getTimeCourseSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getTimeUnit.html b/docs/reference/getTimeUnit.html index 19b6f51..7ed5abf 100644 --- a/docs/reference/getTimeUnit.html +++ b/docs/reference/getTimeUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getValidReactionFunctions.html b/docs/reference/getValidReactionFunctions.html index 5e13e25..7322919 100644 --- a/docs/reference/getValidReactionFunctions.html +++ b/docs/reference/getValidReactionFunctions.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getValue.html b/docs/reference/getValue.html index a51e224..b6fe079 100644 --- a/docs/reference/getValue.html +++ b/docs/reference/getValue.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getVersion.html b/docs/reference/getVersion.html index e2ca15a..f76bcb6 100644 --- a/docs/reference/getVersion.html +++ b/docs/reference/getVersion.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/getVolumeUnit.html b/docs/reference/getVolumeUnit.html index 0292b1a..f31843a 100644 --- a/docs/reference/getVolumeUnit.html +++ b/docs/reference/getVolumeUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/index.html b/docs/reference/index.html index 034f083..ba3cf9c 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/loadCombineArchive.html b/docs/reference/loadCombineArchive.html index 0c633f4..5395114 100644 --- a/docs/reference/loadCombineArchive.html +++ b/docs/reference/loadCombineArchive.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/loadExamples.html b/docs/reference/loadExamples.html index 1efa9e0..6623154 100644 --- a/docs/reference/loadExamples.html +++ b/docs/reference/loadExamples.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/loadModel.html b/docs/reference/loadModel.html index 4c51ecd..65d463a 100644 --- a/docs/reference/loadModel.html +++ b/docs/reference/loadModel.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/loadModelFromString.html b/docs/reference/loadModelFromString.html index 00744fa..5ade944 100644 --- a/docs/reference/loadModelFromString.html +++ b/docs/reference/loadModelFromString.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/loadSBML.html b/docs/reference/loadSBML.html index 3fbb9ba..d45bfeb 100644 --- a/docs/reference/loadSBML.html +++ b/docs/reference/loadSBML.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/loadSBMLFromString.html b/docs/reference/loadSBMLFromString.html index 82df009..939e988 100644 --- a/docs/reference/loadSBMLFromString.html +++ b/docs/reference/loadSBMLFromString.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/newCompartment.html b/docs/reference/newCompartment.html index a252629..16c1936 100644 --- a/docs/reference/newCompartment.html +++ b/docs/reference/newCompartment.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/newEvent.html b/docs/reference/newEvent.html index 324097d..9c5ef3f 100644 --- a/docs/reference/newEvent.html +++ b/docs/reference/newEvent.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/newGlobalQuantity.html b/docs/reference/newGlobalQuantity.html index f2d067a..2f48e14 100644 --- a/docs/reference/newGlobalQuantity.html +++ b/docs/reference/newGlobalQuantity.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/newKineticFunction.html b/docs/reference/newKineticFunction.html index cec3413..b8cb6df 100644 --- a/docs/reference/newKineticFunction.html +++ b/docs/reference/newKineticFunction.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/newModel.html b/docs/reference/newModel.html index bfed79a..5039245 100644 --- a/docs/reference/newModel.html +++ b/docs/reference/newModel.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/newReaction.html b/docs/reference/newReaction.html index 7b7b14e..10e505b 100644 --- a/docs/reference/newReaction.html +++ b/docs/reference/newReaction.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/newSpecies.html b/docs/reference/newSpecies.html index 22dc802..cc74fc7 100644 --- a/docs/reference/newSpecies.html +++ b/docs/reference/newSpecies.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/openCopasi.html b/docs/reference/openCopasi.html index db0c191..84231a2 100644 --- a/docs/reference/openCopasi.html +++ b/docs/reference/openCopasi.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/regex.html b/docs/reference/regex.html index 66ce006..0c3b78e 100644 --- a/docs/reference/regex.html +++ b/docs/reference/regex.html @@ -24,7 +24,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/runLinearNoiseApproximation.html b/docs/reference/runLinearNoiseApproximation.html index 90be569..8f35afd 100644 --- a/docs/reference/runLinearNoiseApproximation.html +++ b/docs/reference/runLinearNoiseApproximation.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/runMetabolicControlAnalysis.html b/docs/reference/runMetabolicControlAnalysis.html index 7c59d94..6e85565 100644 --- a/docs/reference/runMetabolicControlAnalysis.html +++ b/docs/reference/runMetabolicControlAnalysis.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/runOptimization.html b/docs/reference/runOptimization.html index 7fb990b..e3261d2 100644 --- a/docs/reference/runOptimization.html +++ b/docs/reference/runOptimization.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/runParameterEstimation.html b/docs/reference/runParameterEstimation.html index 250617a..c5de821 100644 --- a/docs/reference/runParameterEstimation.html +++ b/docs/reference/runParameterEstimation.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/runSigmaPoint.html b/docs/reference/runSigmaPoint.html index a7b91e3..de85359 100644 --- a/docs/reference/runSigmaPoint.html +++ b/docs/reference/runSigmaPoint.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/runSteadyState.html b/docs/reference/runSteadyState.html index b3d5d87..02ddc21 100644 --- a/docs/reference/runSteadyState.html +++ b/docs/reference/runSteadyState.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/runTimeCourse.html b/docs/reference/runTimeCourse.html index 902eec4..2d89bb0 100644 --- a/docs/reference/runTimeCourse.html +++ b/docs/reference/runTimeCourse.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/saveCombineArchive.html b/docs/reference/saveCombineArchive.html index 43deb8d..759db1c 100644 --- a/docs/reference/saveCombineArchive.html +++ b/docs/reference/saveCombineArchive.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/saveModel.html b/docs/reference/saveModel.html index 9a93122..2dec02a 100644 --- a/docs/reference/saveModel.html +++ b/docs/reference/saveModel.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/saveModelToString.html b/docs/reference/saveModelToString.html index fd93d9e..2253ac8 100644 --- a/docs/reference/saveModelToString.html +++ b/docs/reference/saveModelToString.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/saveSBML.html b/docs/reference/saveSBML.html index 0c32027..debfbc8 100644 --- a/docs/reference/saveSBML.html +++ b/docs/reference/saveSBML.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/saveSBMLToString.html b/docs/reference/saveSBMLToString.html index 78d74a4..54da2d9 100644 --- a/docs/reference/saveSBMLToString.html +++ b/docs/reference/saveSBMLToString.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setAreaUnit.html b/docs/reference/setAreaUnit.html index 106d53f..2d43d77 100644 --- a/docs/reference/setAreaUnit.html +++ b/docs/reference/setAreaUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setCompartments.html b/docs/reference/setCompartments.html index 9ca8e2e..6902e2c 100644 --- a/docs/reference/setCompartments.html +++ b/docs/reference/setCompartments.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setCurrentModel.html b/docs/reference/setCurrentModel.html index 01f816c..caa21a4 100644 --- a/docs/reference/setCurrentModel.html +++ b/docs/reference/setCurrentModel.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setEvents.html b/docs/reference/setEvents.html index 5aa814a..45e9e72 100644 --- a/docs/reference/setEvents.html +++ b/docs/reference/setEvents.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setGlobalQuantities.html b/docs/reference/setGlobalQuantities.html index 4ef2669..e8d8164 100644 --- a/docs/reference/setGlobalQuantities.html +++ b/docs/reference/setGlobalQuantities.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setInitialTime.html b/docs/reference/setInitialTime.html index 0c3a748..da830d4 100644 --- a/docs/reference/setInitialTime.html +++ b/docs/reference/setInitialTime.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setLengthUnit.html b/docs/reference/setLengthUnit.html index ca1f41f..9a0f473 100644 --- a/docs/reference/setLengthUnit.html +++ b/docs/reference/setLengthUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setLinearNoiseApproximationSettings.html b/docs/reference/setLinearNoiseApproximationSettings.html index 69de756..f42ff11 100644 --- a/docs/reference/setLinearNoiseApproximationSettings.html +++ b/docs/reference/setLinearNoiseApproximationSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setMetabolicControlAnalysisSettings.html b/docs/reference/setMetabolicControlAnalysisSettings.html index fdffd6d..d712e53 100644 --- a/docs/reference/setMetabolicControlAnalysisSettings.html +++ b/docs/reference/setMetabolicControlAnalysisSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setModelName.html b/docs/reference/setModelName.html index 8b6eda2..e552363 100644 --- a/docs/reference/setModelName.html +++ b/docs/reference/setModelName.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setOptimizationSettings.html b/docs/reference/setOptimizationSettings.html index 26b87fa..a20a582 100644 --- a/docs/reference/setOptimizationSettings.html +++ b/docs/reference/setOptimizationSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setParameterEstimationSettings.html b/docs/reference/setParameterEstimationSettings.html index 2e22c20..30b6f63 100644 --- a/docs/reference/setParameterEstimationSettings.html +++ b/docs/reference/setParameterEstimationSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setParameters.html b/docs/reference/setParameters.html index 89a73c8..078a464 100644 --- a/docs/reference/setParameters.html +++ b/docs/reference/setParameters.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setQuantityUnit.html b/docs/reference/setQuantityUnit.html index e7b809d..9227545 100644 --- a/docs/reference/setQuantityUnit.html +++ b/docs/reference/setQuantityUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setReactionFunction.html b/docs/reference/setReactionFunction.html index 9805376..9510912 100644 --- a/docs/reference/setReactionFunction.html +++ b/docs/reference/setReactionFunction.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setReactionMappings.html b/docs/reference/setReactionMappings.html index 66f9244..0c761a6 100644 --- a/docs/reference/setReactionMappings.html +++ b/docs/reference/setReactionMappings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setReactions.html b/docs/reference/setReactions.html index 84ba416..2ebcad0 100644 --- a/docs/reference/setReactions.html +++ b/docs/reference/setReactions.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setSpecies.html b/docs/reference/setSpecies.html index eae1727..69fc13c 100644 --- a/docs/reference/setSpecies.html +++ b/docs/reference/setSpecies.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setSteadyStateSettings.html b/docs/reference/setSteadyStateSettings.html index 671e330..61175cb 100644 --- a/docs/reference/setSteadyStateSettings.html +++ b/docs/reference/setSteadyStateSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setTimeCourseSettings.html b/docs/reference/setTimeCourseSettings.html index 6cf80ce..13d05cb 100644 --- a/docs/reference/setTimeCourseSettings.html +++ b/docs/reference/setTimeCourseSettings.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setTimeUnit.html b/docs/reference/setTimeUnit.html index 871bf13..1d7e783 100644 --- a/docs/reference/setTimeUnit.html +++ b/docs/reference/setTimeUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/setVolumeUnit.html b/docs/reference/setVolumeUnit.html index ab5ffa8..6fb7ea4 100644 --- a/docs/reference/setVolumeUnit.html +++ b/docs/reference/setVolumeUnit.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/unloadAllModels.html b/docs/reference/unloadAllModels.html index 3ce7f33..3967a7b 100644 --- a/docs/reference/unloadAllModels.html +++ b/docs/reference/unloadAllModels.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/unloadModel.html b/docs/reference/unloadModel.html index 6f0f910..b82613b 100644 --- a/docs/reference/unloadModel.html +++ b/docs/reference/unloadModel.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0 diff --git a/docs/reference/updateInitialState.html b/docs/reference/updateInitialState.html index 67597ad..01bda17 100644 --- a/docs/reference/updateInitialState.html +++ b/docs/reference/updateInitialState.html @@ -17,7 +17,7 @@ CoRC - 0.11.1 + 0.12.0