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Releases: jpahle/CoRC

CoRC v0.5.0

04 Apr 22:25
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CoRC v0.5.0 Pre-release
Pre-release
  • Rebase on COPASI release 4.25 sources.
  • Add a preserve_concentrations argument to setCompartments() to preserve species concentrations instead of particle numbers on adjustment of compartment sizes.
  • Fix a bug where clearing initial expressions in setter functions prevented them from adjusting initial values.
  • Enable for getCopasi() to fall back on github as a download mirror.
  • Minor fixes and code cleanups.

CoRC v0.4.0

06 Aug 14:42
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CoRC v0.4.0 Pre-release
Pre-release
  • Rebase on COPASI release 4.24 sources.
  • Fix sigma point method for cases other than two dependent variables.
  • Use parallel::parLapplyLB() for parallel processing as it was fixed in R version 3.5.
  • Minor fixes and code cleanups.

CoRC v0.3.0

19 Apr 07:01
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CoRC v0.3.0 Pre-release
Pre-release
  • Rebase on COPASI release 4.23 sources.
  • Prepare for R version 3.5.
  • Add unit system.
  • Allow NaN, Inf and -Inf for many values.
  • Add getVersion() for retrieving the version of the COPASI backend.

CoRC v0.2.1

01 Mar 08:15
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CoRC v0.2.1 Pre-release
Pre-release
  • Breaking: Rename first argument of newReaction() from scheme to reaction.
  • Rebase on latest COPASI 4.23 sources.
    • Fixes rare crashes.
  • Minor fixes

CoRC v0.2.0

19 Feb 09:48
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CoRC v0.2.0 Pre-release
Pre-release
  • Rebase on latest COPASI development sources.
  • Add functions to handle SBML models as strings (loadSBMLFromString(), saveSBMLToString()).
  • Allow for currently running tasks to be terminated interactively (issue #3).
  • Fix loadSBML function failing for local files.
  • Fix installation on UNIX systems.
  • Minor fixes and improvements.

CoRC v0.1.0

19 Jan 15:40
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CoRC v0.1.0 Pre-release
Pre-release
  • Rebase on latest COPASI development sources.
  • Add model event functioniality (event(), event_strict(), getEvents(), setEvents(), newEvent(), deleteEvent()).
  • The package now generally uses "" instead of NA to denote unset or empty expressions.
  • Allow expressions to be automatically coerced from finite numeric and logical values. E.g. getValue(1) instead of getValue("1").
  • Fix crashes on entity deletion. Deletion functions now delete recursively.
  • Generally warn if model fails to compile.
  • Fix errors with argument type of setCompartments() and setGlobalQuantities().
  • Use new Copasi XML parser.

CoRC v0.0.1

15 Nov 10:09
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CoRC v0.0.1 Pre-release
Pre-release
  • Initial public beta release