Releases: jpahle/CoRC
Releases · jpahle/CoRC
CoRC v0.5.0
- Rebase on COPASI release 4.25 sources.
- Add a
preserve_concentrations
argument tosetCompartments()
to preserve species concentrations instead of particle numbers on adjustment of compartment sizes. - Fix a bug where clearing initial expressions in setter functions prevented them from adjusting initial values.
- Enable for
getCopasi()
to fall back on github as a download mirror. - Minor fixes and code cleanups.
CoRC v0.4.0
- Rebase on COPASI release 4.24 sources.
- Fix sigma point method for cases other than two dependent variables.
- Use
parallel::parLapplyLB()
for parallel processing as it was fixed in R version 3.5. - Minor fixes and code cleanups.
CoRC v0.3.0
- Rebase on COPASI release 4.23 sources.
- Prepare for R version 3.5.
- Add unit system.
- Allow
NaN
,Inf
and-Inf
for many values. - Add
getVersion()
for retrieving the version of the COPASI backend.
CoRC v0.2.1
- Breaking: Rename first argument of
newReaction()
fromscheme
toreaction
. - Rebase on latest COPASI 4.23 sources.
- Fixes rare crashes.
- Minor fixes
CoRC v0.2.0
- Rebase on latest COPASI development sources.
- Add functions to handle SBML models as strings (
loadSBMLFromString()
,saveSBMLToString()
). - Allow for currently running tasks to be terminated interactively (issue #3).
- Fix loadSBML function failing for local files.
- Fix installation on UNIX systems.
- Minor fixes and improvements.
CoRC v0.1.0
- Rebase on latest COPASI development sources.
- Add model event functioniality (
event()
,event_strict()
,getEvents()
,setEvents()
,newEvent()
,deleteEvent()
). - The package now generally uses
""
instead ofNA
to denote unset or empty expressions. - Allow expressions to be automatically coerced from finite numeric and logical values. E.g.
getValue(1)
instead ofgetValue("1")
. - Fix crashes on entity deletion. Deletion functions now delete recursively.
- Generally warn if model fails to compile.
- Fix errors with argument
type
ofsetCompartments()
andsetGlobalQuantities()
. - Use new Copasi XML parser.
CoRC v0.0.1
- Initial public beta release