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Improve assign peptide type 243 #263

Merged
merged 31 commits into from
Oct 25, 2024
Merged

Improve assign peptide type 243 #263

merged 31 commits into from
Oct 25, 2024

Commits on Jul 30, 2024

  1. fix deprecation warning

    @elena-krismer
    elena-krismer committed Jul 30, 2024
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  2. #243 improve assigment of peptide_type

    @elena-krismer
    elena-krismer committed Jul 30, 2024
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  3. Style code (GHA)

    @elena-krismer
    elena-krismer committed Jul 30, 2024
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Commits on Aug 26, 2024

  1. pg_protein_accessions as protein:id

    @elena-krismer
    elena-krismer committed Aug 26, 2024
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  2. remove misc right join

    @elena-krismer
    elena-krismer committed Aug 26, 2024
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  3. Style code (GHA)

    @elena-krismer
    elena-krismer committed Aug 26, 2024
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  4. use left join

    @elena-krismer
    elena-krismer committed Aug 26, 2024
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  5. Merge branch 'improve_assign_peptide_type_243' of https://github.com/… 

    …jpquast/protti into improve_assign_peptide_type_243
    @elena-krismer
    elena-krismer committed Aug 26, 2024
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  6. Style code (GHA)

    @elena-krismer
    elena-krismer committed Aug 26, 2024
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Commits on Aug 27, 2024

  1. update tests

    @elena-krismer
    elena-krismer committed Aug 27, 2024
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  2. Merge branch 'improve_assign_peptide_type_243' of https://github.com/… 

    …jpquast/protti into improve_assign_peptide_type_243
    @elena-krismer
    elena-krismer committed Aug 27, 2024
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  3. Style code (GHA)

    @elena-krismer
    elena-krismer committed Aug 27, 2024
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  4. update rd

    @elena-krismer
    elena-krismer committed Aug 27, 2024
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  5. Merge branch 'improve_assign_peptide_type_243' of https://github.com/… 

    …jpquast/protti into improve_assign_peptide_type_243
    @elena-krismer
    elena-krismer committed Aug 27, 2024
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  6. rd fix

    @elena-krismer
    elena-krismer committed Aug 27, 2024
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Commits on Sep 24, 2024

  1. fix assign_peptide_type

    @elena-krismer
    elena-krismer committed Sep 24, 2024
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  2. Style code (GHA)

    @elena-krismer
    elena-krismer committed Sep 24, 2024
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  3. update assign_peptide_type rd

    @elena-krismer
    elena-krismer committed Sep 24, 2024
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  4. Merge branch 'improve_assign_peptide_type_243' of https://github.com/… 

    …jpquast/protti into improve_assign_peptide_type_243
    @elena-krismer
    elena-krismer committed Sep 24, 2024
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Commits on Sep 29, 2024

  1. fix vroom problem 

    The issue was that the uniprot data seems to now be gziped. I handle this case now in try_query. Not sure if it is generally handled for any potential case but it at least works for uniprot.
    @jpquast
    jpquast committed Sep 29, 2024
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  2. Style code (GHA)

    @jpquast
    jpquast committed Sep 29, 2024
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  3. Fixing assign_peptide_type

    @jpquast
    jpquast committed Sep 29, 2024
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  4. Merge remote-tracking branch 'origin/improve_assign_peptide_type_243'… 

    … into improve_assign_peptide_type_243
    @jpquast
    jpquast committed Sep 29, 2024
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  5. Style code (GHA)

    @jpquast
    jpquast committed Sep 29, 2024
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  6. Add xml2 and jsonlite to suggests

    @jpquast
    jpquast committed Sep 29, 2024
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  7. Fixed another bug in try_query

    @jpquast
    jpquast committed Sep 29, 2024
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Commits on Sep 30, 2024

  1. Fix some issues

    @jpquast
    jpquast committed Sep 30, 2024
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  2. Add changes to NEWS file

    @jpquast
    jpquast committed Sep 30, 2024
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  3. Bump version

    @jpquast
    jpquast committed Sep 30, 2024
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  4. Fix test

    @jpquast
    jpquast committed Sep 30, 2024
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Commits on Oct 25, 2024

  1. Merge branch 'developer' into improve_assign_peptide_type_243

    @jpquast
    jpquast authored Oct 25, 2024
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