changed from window_stats_filename to window_stats_filepath

justin13601 · Aug 28, 2024 · 353d8a5 · 353d8a5
1 parent fa413de
commit 353d8a5
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/aces/__main__.py b/src/aces/__main__.py
@@ -174,8 +174,8 @@ def main(cfg: DictConfig):
                 result = result.with_columns(pl.lit(None, dtype=pl.Int64).alias("patient_id"))
                 result = result.head(0)
         if cfg.window_stats_dir:
-            Path(cfg.window_stats_filename).parent.mkdir(exist_ok=True, parents=True)
-            result.write_parquet(cfg.window_stats_filename)
+            Path(cfg.window_stats_filepath).parent.mkdir(exist_ok=True, parents=True)
+            result.write_parquet(cfg.window_stats_filepath)
         result = get_and_validate_label_schema(result)
         pq.write_table(result, cfg.output_filepath)
     else:

diff --git a/src/aces/configs/aces.yaml b/src/aces/configs/aces.yaml
@@ -14,7 +14,7 @@ config_path: ${cohort_dir}/${cohort_name}.yaml
 output_filepath: ${cohort_dir}/${cohort_name}${data._prefix}.parquet
 # Optional path to store the output file with the raw window data.
 window_stats_dir: null
-window_stats_filename: ${window_stats_dir}/${cohort_name}${data._prefix}.parquet
+window_stats_filepath: ${window_stats_dir}/${cohort_name}${data._prefix}.parquet
 
 log_dir: ${cohort_dir}/${cohort_name}/.logs