BCODMO

Job at BCODMO

Current

Competency Questions for RDF model & Ontology

My master PMs to assign

Parameters Roadmap & Timeline

maybe

Master_parameters_16-02-2022 maybe the version of the MPs Jaci is working on?

RDF Model and Parent Ontology - Draft 2022-01-25

Documentation:

https://app.gitbook.com/@bcodmo/spaces

Git repos:

https://github.com/jaclynsaunders/AWS_BCODMO_UI_dev

https://github.com/BCODMO/Ontology_Lookup_Service

Trello

Data Managers - Parameter Mapping

bco-dmo-semantic-data-project

see drive folder

Amazon EC image:

2nd image: with 32 GiB RAM and 8 CPUs

aws ec2 start-instances --instance-ids i-033969982186d628e

aws ec2 describe-instances --instance-ids i-033969982186d628e

ssh -i ~/.ssh/kai-ontology.pem ubuntu@PublicDnsName e.g. PublicDnsName: ec2-3-94-80-12.compute-1.amazonaws.com

aws ec2 stop-instances --instance-ids i-033969982186d628e

EC2 instance: http://ec2-18-234-75-158.compute-1.amazonaws.com/

private SSH key https://docs.aws.amazon.com/AWSEC2/latest/UserGuide/ec2-key-pairs.html

kai-ontology.pem file in /Users/kai/Desktop/software/kai-ontology.pem

Start/Stop instances:

https://docs.aws.amazon.com/cli/latest/reference/ec2/start-instances.html

https://docs.aws.amazon.com/cli/latest/reference/ec2/stop-instances.html

credentials for using AWSCLI to start/stop the instance:

Access Key: AKIAXLAGZQJYV4BFJSUI

Secret Key: 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

Follow this to log in: https://docs.aws.amazon.com/AWSEC2/latest/UserGuide/ec2-key-pairs.html

ESIP

2021-04-08_vocabularies_in_the_marine_world links to presentations including mine.

OBO

https://www.youtube.com/channel/UCUT0MwXxAFnekhsSJVmHTJw

DM meetings:

Weekly DM Meeting Agenda and Notes

2021 BCODMO folder

older

Parameters for Omics Accessions integrate into Operational module. Guidance on ‘Omics Data Submissions from Jaci. `

SPARQL query though that returns all the master parameters that are currently active

https://lod.bco-dmo.org/browse/?query=SELECT+DISTINCT+%3FmasterParam+%3FshortDesc+%3Fdefinition+%3FshortName%0D%0AWHERE+%7B+%0D%0A%3FmasterParam+odo%3AhasParameterShortDescription+%3FshortDesc+.+%0D%0A%3FmasterParam+owl%3Adeprecated+0+.+%23Binay+-+only+show+those+that+are+not+deprecated%0D%0AOPTIONAL+%7B%0D%0A%3FmasterParam+skos%3Adefinition+%3Fdefinition+.+%0D%0A%3FmasterParam+odo%3AhasParameterShortName+%3FshortName.%0D%0A%7D%7D

Some possible goals for year2

1) DM docs (TRAINING DMS)
2) taxonomny (finish bio modules)
3) constraints (coordinate with Jaci)
4) back catologue (coordination meeting september)
5) UNITS

First image with less memory: (OLD)

1. Start: aws ec2 start-instances --instance-ids i-059495b44127b2561
2. Get the DNS name aws ec2 describe-instances --instance-ids i-059495b44127b2561
3. ssh in: ssh -i ~/.ssh/kai-ontology.pem ubuntu@PublicDnsName, e.g. PublicDnsName: ec2-54-91-81-141.compute-1.amazonaws.com
4. Stop: aws ec2 stop-instances --instance-ids i-059495b44127b2561