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Planet Microbe
Wiki page for the work on the Planet Microbe project.
Link to google docs mapping metadata from the projects to ontology terms.
Link to draft of Planet Microbe paper
Wiki Page for the management and creation of new OBO ontology terms by which to annotate planet microbe metadata, as well as aid to standardize the commonly used metadata for the marine microbiology & oceanography communities.
Created google spread sheet for the Automated term creation
//subclass of 'opacity'
An osmolarity quality inhering in a bearer by virtue of the bearer's amount of solute, composed primarily of dissolved ionic compounds, per liter of solution.
is a osmolarity
//synonym NOX 'nitrate' 'nitrite' 'sea water'
['alkalinity'](no purl yet) 'water'
A salinity quality inhering in water by virtue of that water's amount of salt content per volume.
[salinity](no purl yet) and ('inheres in' some ('salt' and ('part of' some 'water')))
['turbidity'](no purl yet) 'water'
This may refer to any microorganism not just bacteria perhaps just prokaryotes but maybe also small eukaryotes double check this. 'Bacteria' 'water'
entity_attribute_location design pattern
Making use of the pattern from the design pattern script entity_attribute_location.yaml and data csv entity_attribute_location.csv
concentration of classes
'concentration of' and ('inheres in' some (X and ('part of' some Y)))
'bacteriochlorophyll a' 'water'
'divinyl chlorophyll a' 'water'
'divinyl chlorophyll b' 'water'
'Adenosine 5'-triphosphate' 'water'
'Guanosine 5'-triphosphate' 'water'
**additional terms not in the original datasets but which may show up in oceanography/microbial ecology measurements:
add iron and manganese next
entity_attribute design pattern
The following use the entity_attribute.yaml design pattern, with entity_attribute.csv data csv. Which was responsible for the creation of the example class acidity of soil or conductivity of soil.