Project for the course Introduction to Computational Biology at the University of Antwerp, 2018-2019. In this project we built compartmental models (SEIRZ, SEISZ) for the spread of a disease inside a population of amphibians. Afterwards we evaluated a number of mitigation measures using the previously built models. This was documented in a paper. Regarding the supplied code: note that the GPLv3 (or later version) license applies.
The data used in this project was taken from Lips et al. [1].
[1] Lips, K. R., Brem, F., Brenes, R., Reeve, J. D., Alford, R. A., Voyles, J., Carey, C., Livo, L., Pessier, A. P., Collins, J. P. (2006). Emerging infectious disease and the loss of biodiversity in a Neotropical amphibian community. PNAS 103, 3165–3170.