Merge SPipes debug module

[blcham]

Issue 1:
On KODI forms AdvancedProgressListener returns Transaction already active! (we used to have this issue before):

java.lang.IllegalStateException: Transaction already active!
	at cz.cvut.kbss.jopa.transactions.EntityTransactionImpl.begin(EntityTransactionImpl.java:40)
	at cz.cvut.spipes.logging.AdvancedLoggingProgressListener.moduleExecutionFinished(AdvancedLoggingProgressListener.java:316)
	at cz.cvut.spipes.engine.ExecutionEngineImpl.lambda$_executePipeline$8(ExecutionEngineImpl.java:97)
	at cz.cvut.spipes.engine.ExecutionEngineImpl.lambda$fire$2(ExecutionEngineImpl.java:38)
	at java.base/java.lang.Iterable.forEach(Iterable.java:75)
	at cz.cvut.spipes.engine.ExecutionEngineImpl.fire(ExecutionEngineImpl.java:36)
	at cz.cvut.spipes.engine.ExecutionEngineImpl._executePipeline(ExecutionEngineImpl.java:97)
	at cz.cvut.spipes.engine.ExecutionEngineImpl.lambda$_executePipeline$6(ExecutionEngineImpl.java:80)
	at java.base/java.util.stream.Collectors.lambda$uniqKeysMapAccumulator$1(Collectors.java:178)
	at java.base/java.util.stream.ReduceOps$3ReducingSink.accept(ReduceOps.java:169)
	at java.base/java.util.LinkedList$LLSpliterator.forEachRemaining(LinkedList.java:1239)
	at java.base/java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:484)
	at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:474)
	at java.base/java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:913)
	at java.base/java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
	at java.base/java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:578)