This repository contains data, notes, and code from a network biology study group which meets weekly at the University of Maryland, College Park.
The study group covers material from a range of sources and references will be cited in the context of the notes wherein they are used.
Much of the earlier material, hoewever, is based on text from an introductory textbook on networks:
Networks: An Introduction M.E.J. Newman 2010
- Stochastic Block Models [DD]
- Network Biology Overview I [KH]
- Network Biology Overview II [NE]
- Mathematics of Networks I (6.1-6.9) [KO]
- Mathematics of Networks II (6.10-6.14) [JH]
- Measures and Metrics I (7.1-7.7) [DD]
- Measures and Metrics II (7.8-7.11) [KH]
- Real-world Networks I (8.1-8.4) [KO]
- Real-world Networks II (8.5-?) [KO]
- Quantifying the relationship between co-expression, co-regulation and gene function [KH]