🧹 fix deprecated info in config

kids-first · Sep 6, 2023 · dbe5248 · dbe5248
1 parent 89d59bd
commit dbe5248
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Showing 2 changed files with 6 additions and 7 deletions.
diff --git a/STUDY_CONFIGS/aml_sd_pet7q6f2_2018_case_meta_config.json b/STUDY_CONFIGS/aml_sd_pet7q6f2_2018_case_meta_config.json
@@ -70,13 +70,13 @@
         "dtypes": {
             "fusion": {
                 "ext": "fusions.txt",
-                "cbio_name": "data_fusions.txt",
+                "cbio_name": "data_sv.txt",
                 "meta_file_attr": {
-                    "stable_id": "fusion",
+                    "stable_id": "structural_variants",
                     "profile_name": "Predicted RNA fusions",
-                    "profile_description": "PBTA fusion data using arriba and STAR Fusion, annotated and filtered using annoFuse. Also contains DGD custom filtered fusions",
-                    "genetic_alteration_type": "FUSION",
-                    "datatype": "FUSION",
+                    "profile_description": "Fusion data using arriba and STAR Fusion, annotated and filtered using annoFuse",
+                    "genetic_alteration_type": "STRUCTURAL_VARIANT",
+                    "datatype": "SV",
                     "show_profile_in_analysis_tab": "true"
                 }
             }

diff --git a/STUDY_CONFIGS/aml_sd_pet7q6f2_2018_data_processing_config.json b/STUDY_CONFIGS/aml_sd_pet7q6f2_2018_data_processing_config.json
@@ -15,8 +15,7 @@
       "header": "/home/ubuntu/tools/kf-cbioportal-etl/REFS/maf_KF_CONSENSUS.txt"
     },
     "rsem": "RSEM_gene",
-    "fusion": "annofuse_filtered_fusions_tsv",
-    "fusion_sq_file": "seq_center_resource.txt"
+    "fusion": "annofuse_filtered_fusions_tsv"
   },
   "dl_file_type_list": ["RSEM_gene","annofuse_filtered_fusions_tsv"],
   "ens_gene_list":"/home/ubuntu/tools/kf-cbioportal-etl/REFS/gencode27_gene_list.txt",