Merge pull request #27 from kids-first/bug/mb-fix-ss-ext

🔧 Update file ext default to new spec

workflows/kfdrc-single-sample-genotyping-wf.cwl

@@ -106,7 +106,7 @@ inputs:
       \ the max-Gaussians forces the program to group variants into a smaller number\
       \ of clusters, which results in more variants per cluster."}
   output_basename: string
-  tool_name: { type: 'string?', default: "CGP.filtered.deNovo.vep", doc: "File name string suffx to use for output files" }
+  tool_name: { type: 'string?', default: "single.vqsr.filtered.vep_105", doc: "File name string suffx to use for output files" }
   # Annotation
   bcftools_annot_gnomad_columns: {type: 'string?', doc: "csv string of columns from\
       \ annotation to port into the input vcf, i.e", default: "INFO/gnomad_3_1_1_AC:=INFO/AC,INFO/gnomad_3_1_1_AN:=INFO/AN,INFO/gnomad_3_1_1_AF:=INFO/AF,INFO/gnomad_3_1_1_nhomalt:=INFO/nhomalt,INFO/gnomad_3_1_1_AC_popmax:=INFO/AC_popmax,INFO/gnomad_3_1_1_AN_popmax:=INFO/AN_popmax,INFO/gnomad_3_1_1_AF_popmax:=INFO/AF_popmax,INFO/gnomad_3_1_1_nhomalt_popmax:=INFO/nhomalt_popmax,INFO/gnomad_3_1_1_AC_controls_and_biobanks:=INFO/AC_controls_and_biobanks,INFO/gnomad_3_1_1_AN_controls_and_biobanks:=INFO/AN_controls_and_biobanks,INFO/gnomad_3_1_1_AF_controls_and_biobanks:=INFO/AF_controls_and_biobanks,INFO/gnomad_3_1_1_AF_non_cancer:=INFO/AF_non_cancer,INFO/gnomad_3_1_1_primate_ai_score:=INFO/primate_ai_score,INFO/gnomad_3_1_1_splice_ai_consequence:=INFO/splice_ai_consequence"}
@@ -362,5 +362,5 @@ hints:
 - VCF
 - VEP
 "sbg:links":
-- id: 'https://github.com/kids-first/kf-germline-workflow/releases/tag/v0.4.2'
+- id: 'https://github.com/kids-first/kf-germline-workflow/releases/tag/v0.4.3'
   label: github-release