📚 update gatk doc links #3
Workflow file for this run
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name: Update Docker Tables | |
on: [pull_request] | |
permissions: | |
contents: write | |
pull-requests: write | |
jobs: | |
update-tables: | |
name: Update Docker Tables | |
runs-on: ubuntu-22.04 | |
steps: | |
- id: checkout | |
uses: actions/checkout@v3 | |
name: Checkout Repo | |
with: | |
ref: ${{ github.head_ref }} | |
submodules: true | |
- id: make-jointgenotyping-table | |
name: Make Docker Table for Joint Genotyping Workflow | |
run: | | |
python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_jointgenotyping.md workflow/kfdrc-jointgenotyping-refinement-workflow.cwl | |
- id: cpr | |
name: Create Pull Request | |
uses: peter-evans/create-pull-request@v5 | |
with: | |
commit-message: update docker table | |
title: Update Production WF Docker Tables | |
body: | | |
Automated changes by [create-pull-request](https://github.com/peter-evans/create-pull-request) GitHub action. | |
Docker tables for production workflows now have most up-to-date and complete list of Dockers. | |
delete-branch: true | |
branch: ${{ github.head_ref }}-adjust-dockers | |
labels: bix-dev |