TelomereHunter
This release adds TelomereHunter as a tool to the repository. It is not yet part of the main somatic workflow.
Somatic Workflow Fixes
Two quick fixes for the somatic workflow.
- We no longer add "reheader" to the name of prepass VCF outputs. This change was made to ensure that file naming stayed consistent across different run modes
- We changed the way that the chrLen file is built. Occasionally, the b-allele files for male samples would be lacking any chrY calls. When that happens, ControlFREEC will error out with:
An error occurred in GenomeCopyNumber::addBAFinfo: could not find an SNP index for Y. We added a filter step that removes any chromosomes from the chrLen file that are not present in the b allele file.
What's Changed
- 🎉 telomerehunter init by @dmiller15 in #191
- 🐛 remove chrlen chrs not in ballele by @dmiller15 in #192
- Update Production WF Docker Tables by @github-actions in #193
- 🔧 do not rename reheadered vcfs by @dmiller15 in #194
- 🔖 bump release number by @dmiller15 in #195
Full Changelog: v5.1.1...v5.2.0
Contributors
dmiller15