Dockerfile

# Build image: docker build --platform linux/x86_64 -t kisudsoe/postgwas .

FROM ubuntu:latest
WORKDIR /

MAINTAINER Suhlab-Seungsoo_Kim

ENV PATH="/root/miniconda3/bin:${PATH}"
ARG PATH="/root/miniconda3/bin:${PATH}"

RUN apt update -y --fix-missing && \
	apt upgrade -y

# Install system dependencies
## openjdk-11-jre-headless
RUN apt -y install wget && rm -rf /var/lib/apt/lists/*

# Install miniconda
RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
	mkdir /root/.conda && \
	bash Miniconda3-latest-Linux-x86_64.sh -b && \
	rm -f Miniconda3-latest-Linux-x86_64.sh && \
	conda config --add channels conda-forge && \
	conda config --add channels bioconda && \
	conda config --add channels biobuilds && \
	conda config --add channels r

# Install softwares
COPY requirements.txt ./
RUN conda install -y -c defaults -c conda-forge -c bioconda -c biobuilds -c r --no-update-deps --file requirements.txt

# Copy PostGWAS-tools source codes
COPY . .
WORKDIR /