cmprsk dep #194
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| name: R tests | |
| on: [push] | |
| jobs: | |
| r_targeted: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| runs-on: ${{ matrix.config.os }} | |
| steps: | |
| - name: Checkout repository incl. submodules | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - run: tlmgr --version | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install -y pandoc libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| ${{ env.R_LIBS_USER }} | |
| !${{ env.R_LIBS_USER }}/pak | |
| key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }} | |
| restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes","covr","pkgdown"), repos="https://cloud.r-project.org") | |
| remotes::install_deps("R-package/targeted", dep=T, upgrade=T) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: | | |
| make r_check pkg=targeted | |
| - name: Upload Coverage to Codecov | |
| run: | | |
| covr::codecov(path="R-package/targeted", type="all") | |
| shell: Rscript {0} | |