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@knightlab-analyses

Knight Lab Analyses

Software used for analysis in various Knight Lab projects

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  1. knight-docs knight-docs Public

    General Knight Lab documentation and reference cards

    2

Repositories

Showing 10 of 67 repositories
  • OSAstudy_16S_HFHC Public

    Analysis of the 16S rRNA (V4) amplicon sequencing data of a mouse model (ApoE-/-) of obstructive sleep apnea on high fat, high cholesterol diet (HFHC) in collaboration with the Haddad Lab (UCSD)

    knightlab-analyses/OSAstudy_16S_HFHC’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Oct 8, 2024
  • dynamics Public

    Analysis of Multiple Circadian/Longitudinal Datasets

    knightlab-analyses/dynamics’s past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Aug 31, 2024
  • marmoset-diet-change Public

    Shotgun metagenomic analysis of laboratory-house common marmoset breeding colony that switched from pelleted to gel diet

    knightlab-analyses/marmoset-diet-change’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jan 17, 2024
  • birdman-analyses Public
    knightlab-analyses/birdman-analyses’s past year of commit activity
    Jupyter Notebook 6 1 0 0 Updated Dec 30, 2023
  • uc-severity-multiomics Public
    knightlab-analyses/uc-severity-multiomics’s past year of commit activity
    Jupyter Notebook 4 BSD-3-Clause 5 2 0 Updated Jul 25, 2023
  • greengenes2 Public
    knightlab-analyses/greengenes2’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated May 1, 2023
  • imsms-ml Public

    Data exploration and analysis scripts for the machine learning analysis of the iMSMS collaboration.

    knightlab-analyses/imsms-ml’s past year of commit activity
    Python 2 0 0 0 Updated Mar 16, 2023
  • mycobiome Public

    Pan-cancer mycobiome atlas

    knightlab-analyses/mycobiome’s past year of commit activity
    Jupyter Notebook 23 15 0 0 Updated Oct 7, 2022
  • evident-analyses Public
    knightlab-analyses/evident-analyses’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Jul 11, 2022
  • version-testing-fastp-minimap2 Public

    version-testing for fastp-minimap2

    knightlab-analyses/version-testing-fastp-minimap2’s past year of commit activity
    Python 0 BSD-3-Clause 3 0 0 Updated Apr 15, 2022
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