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16 Commits
0 - Dataset preparation for WGCNA.R
0 - Dataset preparation for WGCNA.R
 
 
1 - Soft thresholding and module creation.R
1 - Soft thresholding and module creation.R
 
 
10 - Cluster analysis of methylation module correlations.R
10 - Cluster analysis of methylation module correlations.R
 
 
11 - Additional Kwithin vs MM.R
11 - Additional Kwithin vs MM.R
 
 
12 - Clustering of methylation promoters by module.R
12 - Clustering of methylation promoters by module.R
 
 
13 - pcvlust of methylation and module MEs.R
13 - pcvlust of methylation and module MEs.R
 
 
14 - pcvlust of methylation and module MEs_take2.R
14 - pcvlust of methylation and module MEs_take2.R
 
 
15 - Additional MM Analyses.R
15 - Additional MM Analyses.R
 
 
16 - Boxplots_modules_Pam50_nicer.R
16 - Boxplots_modules_Pam50_nicer.R
 
 
17 - Modules_v_traits_nicer.R
17 - Modules_v_traits_nicer.R
 
 
18 - Gene Significance.R
18 - Gene Significance.R
 
 
2 - Module exploration - kWithin and kME calculations.R
2 - Module exploration - kWithin and kME calculations.R
 
 
20 - ME vs Mutational Signatures.R
20 - ME vs Mutational Signatures.R
 
 
3 - Module exploration - relationship to each other.R
3 - Module exploration - relationship to each other.R
 
 
4 - Module exploration - comparing modules to clinical traits.R
4 - Module exploration - comparing modules to clinical traits.R
 
 
5 - Module exploration - Modules and clinical traits matrix calculations.R
5 - Module exploration - Modules and clinical traits matrix calculations.R
 
 
6 - Module exploration - relationship to promoter methylation.R
6 - Module exploration - relationship to promoter methylation.R
 
 
7 - Module exploration - Visant outputs of module connections.R
7 - Module exploration - Visant outputs of module connections.R
 
 
8 - Module Exploration - Survival_by_module.R
8 - Module Exploration - Survival_by_module.R
 
 
9 - Sample subtyping - Determining predominant module for samples.R
9 - Sample subtyping - Determining predominant module for samples.R
 
 
Citations.R
Citations.R
 
 
Modules_DS0.RData
Modules_DS0.RData
 
 
README.md
README.md
 
 

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WGCNA_meta

METABRIC validation of WGCNA work

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WGCNA meta-analysis of two breast cancer datasets

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breast-cancer wgcna

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