setup.py

from setuptools import setup
from numpy.distutils.core import Extension, setup

with open("README.md", "r") as fh:
    long_description = fh.read()

shic_stats = Extension("diploshic.shicstats",
                       sources=["diploshic/shicstats.pyf",
                                "diploshic/utils.c"],
                      )
setup(name='diploSHIC',
      version='1.0.6',
      description='diploSHIC',
      long_description=long_description,
      long_description_content_type="text/markdown",
      url='https://github.com/kr-colab/diploSHIC',
      author='Andrew Kern',
      author_email='adkern@uoregon.edu',
      license='MIT',
      packages=['diploshic'],
      install_requires=['numpy',
                        'scipy',
                        'matplotlib',
                        'pandas',
                        'scikit-allel',
                        'scikit-learn',
                        'tensorflow==2.15.0',
                        'keras'],
      scripts=['diploshic/diploSHIC',
              'diploshic/makeFeatureVecsForChrArmFromVcfDiploid.py',
              'diploshic/makeFeatureVecsForChrArmFromVcf_ogSHIC.py',
              'diploshic/makeFeatureVecsForSingleMsDiploid.py',
              'diploshic/makeFeatureVecsForSingleMs_ogSHIC.py',
              'diploshic/makeTrainingSets.py'],
      zip_safe=False,
      extras_require={
          'dev': [],
      },
      setup_requires=[],
      ext_modules=[shic_stats]
)