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@krishnanlab

Krishnan Lab

Laboratory for Computational Genomics and Biomedical Data Science
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  1. PecanPy PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    Python 151 22

  2. teaching teaching Public

    Courses & workshops led by members of the Krishnan Lab.

    Jupyter Notebook 23 19

  3. txt2onto txt2onto Public

    Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

    Python 23 6

  4. obnb obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    Python 20

  5. PyGenePlexus PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    Python 20 3

  6. RNAseq_coexpression RNAseq_coexpression Public

    In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.

    HTML 11 3

Repositories

Showing 10 of 32 repositories
  • geneplexus-app-v2 Public

    GenePlexus App - backend (cloud functions) and frontend

    krishnanlab/geneplexus-app-v2’s past year of commit activity
    TypeScript 2 0 10 0 Updated Sep 19, 2024
  • PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    krishnanlab/PyGenePlexus’s past year of commit activity
    Python 20 3 16 6 Updated Sep 16, 2024
  • txt2onto_prediction_workflow Public

    Finding public RNA-seq samples and studies related to the list of diseases requested by Lucas Gillenwater

    krishnanlab/txt2onto_prediction_workflow’s past year of commit activity
    Python 0 0 0 0 Updated Sep 10, 2024
  • .github Public
    krishnanlab/.github’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 7 Updated Sep 1, 2024
  • cross-species-knowledge-transfer-paper-and-data Public

    Repo houses paper reviewed in cross species knowledge transfer paper and related data

    krishnanlab/cross-species-knowledge-transfer-paper-and-data’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Aug 29, 2024
  • microbiome-metadata-annotation Public

    Training text-based ML models to predict protocols for microbiome samples

    krishnanlab/microbiome-metadata-annotation’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 27, 2024
  • txt2onto Public

    Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

    krishnanlab/txt2onto’s past year of commit activity
    Python 23 BSD-3-Clause 6 2 1 Updated Aug 21, 2024
  • pydab Public

    A _blazingly fast_ Python package for modifying and converting DAB files

    krishnanlab/pydab’s past year of commit activity
    Python 3 MIT 0 3 6 Updated Aug 6, 2024
  • obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    krishnanlab/obnb’s past year of commit activity
    Python 20 MIT 0 57 6 Updated Aug 6, 2024
  • PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    krishnanlab/PecanPy’s past year of commit activity
    Python 151 BSD-3-Clause 22 15 (1 issue needs help) 6 Updated Aug 6, 2024
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