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pydab

A blazingly fast Python package for modifying and converting DAB files

Installation

pip install pydab

Alternatively, install the latest dev version from github

pip install git+https://github.com/krishnanlab/pydab

Quick start

Convert a DAB file to a DAT file, i.e., tab separated edgelist file with three columns.

Gene1 Gene2 Weight12
Gene1 Gene3 Weight13
...

To convert a DAB file data.dab into data.dat, simply run

pydab -i data.dab -o data.dat

Some up-coming features

  • DAT -> DAB
  • Export to .npz dense array
  • Export to .npz CSR (directly supported by PecanPy)
  • More