Release v0.2.8

v0.2.8

Notes

1. Add Jupyter Notebook for processing BEAST output.
2. Updates to Root-To-Tip Regression and Geographic.
3. Update and sync all metadata files.
4. Separated auspice output into beast/ml datasets.
5. Add beast timetrees to auspice.

Commits

• 25acf3d7 update CHANGELOG for v0.2.8
• 64df6aac stable notebooks and update docs
• ba6a6c66 remove screenshot
• 7c5b5cd9 update autologs
• b874f75b checkpoint notebooks before troubleshooting
• acd301df rearrange confidence intervals
• 5302b404 first draft of beast trees
• bb617a82 checkpoint beast
• 4153f6e8 add legends and white background
• c3f22efb correct rtt p_values for multiple tests
• faafa254 add mantel test to iqtree stats
• fc321f4c update auspice time-dependency
• 49314a4e add time-dependency to auspice
• 14796fe6 update iqtree stats
• c94afdce plotting overhaul
• a7b01119 add joint probability of mugration and branch support
• 0fc3a25f update iqtree stats with ibd
• 87c715f1 update plot target and load beast dir