Nicer API for density-adaptive hit scoring
Pre-release
Pre-release
described in more detail in #91
The API is demonstrated in the TAL-GATA notebook here: https://github.com/kundajelab/tfmodisco/blob/e9b6db741ddfe73d0d7b86db50fb213e0d399612/examples/simulated_TAL_GATA_deeplearning/TF_MoDISco_TAL_GATA.ipynb
And also on Alex's E2F6 data (profile task) here: https://nbviewer.jupyter.org/github/kundajelab/tfmodisco_bio_experiments/blob/master/alex_keytfs/tfmodisco_ac25874/E2F6_profile_v0.5.14.1_hitscoring.ipynb
This version also includes some Leiden-related fixes pertaining to vtraag/leidenalg#68 and vtraag/leidenalg#66