Skip to content

Bugfix, TF2 compatibility, access to motifs pre final reassigment

Pre-release
Pre-release
Compare
Choose a tag to compare
@AvantiShri AvantiShri released this 08 Oct 04:33
· 194 commits to master since this release
v0.5.8.1
c25d398
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Corresponds to PR #70

Description of changes:

  • When I did refactoring to include support for MEME initialization, I had a stray line that effectively caused the "sign consistency check" (which discards motifs for which the signs of the overall contribution scores disagrees with what you expect for the metacluster - such motifs can arise because seqlets get recentered during the various intermediate processing steps) to be bypassed (this effectively means a few extra motifs that seemed to have the wrong sign could have been returned). Related to the error encountered in #66
  • Made some minor fixes for tensorflow 2 support
  • The final step of tf-modisco is a "reassignment" step where motifs that have a small number of seqlets are disbanded, and an attempt is made to "reassign" their seqlets to the other motifs. If they so desire, users can now access what the tfmodisco motifs are prior to this final reassignment step.
Assets 2
Loading