feat: Setup wrapper to retrieve data #12

	name: CI
	permissions: write-all
	on:
	pull_request:
	push:
	branches: [main]

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	defaults:
	run:
	shell: bash -el {0}

	jobs:
	pre-commit-checks:
	name: Pre-commit Checks
	runs-on: ubuntu-latest
	timeout-minutes: 30
	env:
	PRE_COMMIT_USE_MICROMAMBA: 1
	steps:
	- uses: actions/checkout@v4
	- name: micromamba installation
	uses: mamba-org/setup-micromamba@9ef24caa388648dc149200514192b99bbf3563e4
	- name: add micromamba to GITHUB_PATH
	run: echo "${HOME}/micromamba-bin" >> "$GITHUB_PATH"
	- name: Install Python 3.11
	uses: actions/setup-python@v4
	with:
	python-version: "3.11"
	- name: Run pre-commit checks
	uses: pre-commit/action@v3.0.0
	env:
	PRE_COMMIT_USE_MICROMAMBA: 1

	ci:
	name: Testing CI
	runs-on: ubuntu-latest
	timeout-minutes: 30
	# TODO: include services database container once needed
	steps:
	- uses: actions/checkout@v4
	- name: conda env setup
	uses: mamba-org/setup-micromamba@9ef24caa388648dc149200514192b99bbf3563e4
	with:
	environment-file: environment.yml
	cache-environment: true
	- name: Install package
	run: python -m pip install --no-build-isolation --no-deps --disable-pip-version-check -e .
	- name: Run unit tests
	run: python -m pytest --cov-report=xml
	- name: Get Cover
	uses: orgoro/coverage@v3.1
	if: github.event_name == 'pull_request'
	with:
	coverageFile: ./coverage.xml
	token: ${{ github.token }}

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