Update mcquant version to 1.6.0 (#552)

labsyspharm · May 31, 2024 · a095a05 · a095a05
1 parent cbd0f14
commit a095a05
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/config/defaults.yml b/config/defaults.yml
@@ -106,7 +106,7 @@ modules:
   quantification:
     name: mcquant
     container: labsyspharm/quantification
-    version: 1.5.3
+    version: 1.6.0
   downstream:
     -
       name: naivestates

diff --git a/modules/quantification.nf b/modules/quantification.nf
@@ -25,7 +25,7 @@ process mcquant {
 
     """
     shopt -s nullglob
-    python /app/CommandSingleCellExtraction.py --image $tag \
+    mcquant --image $tag \
     ${Opts.moduleOpts(module, mcp)} --output . --channel_names $ch
     """
 }