Floating stepsize not supported for time_course

[StefanHauer]

When changing the demo example from integer timepoints (in the .exp file) to floating timepoints with a stepsize of 0.1 (in the .conf file) and changing nothing else, the following error will occur:
"Sorry, an unknown error occurred: ValueError: invalid literal for int() with base 10: '0.1'"

This issue seems to be easily fixed by changing in the config.py file on line 377 int to float. However, I have tried runing the "run_all.py" test file, but the tests seem to fail both before and after my changes, due to me using Windows and the "run_all.py" script seems to be not Windows compatible. As a consequence I do not seem to be able to verify if this change breaks any other functionality.

[wshlavacek]

Hi Stefan, Thanks for alerting us to this issue. What version of PyBNF are you using? --Bill

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On Sat, Dec 3, 2022 at 12:05 PM StefanHauer ***@***.***> wrote: When changing the demo example from integer timepoints (in the .exp file) to floating timepoints with a stepsize of 0.1 (in the .conf file) and changing nothing else, the following error will occur: "Sorry, an unknown error occurred: ValueError: invalid literal for int() with base 10: '0.1'" This issue seems to be easily fixed by changing in the config.py file on line 377 int to float. However, I have tried runing the "run_all.py" test file, but the tests seem to fail both before and after my changes, due to me using Windows and the "run_all.py" script seems to be not Windows compatible. As a consequence I do not seem to be able to verify if this change breaks any other functionality. — Reply to this email directly, view it on GitHub <#314>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AETOR55ADXJN4F3RTVDXZHTWLOKYBANCNFSM6AAAAAASS4S4SM> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[wshlavacek]

Also... what version of NumPy are you using?

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On Sat, Dec 3, 2022 at 12:05 PM StefanHauer ***@***.***> wrote: When changing the demo example from integer timepoints (in the .exp file) to floating timepoints with a stepsize of 0.1 (in the .conf file) and changing nothing else, the following error will occur: "Sorry, an unknown error occurred: ValueError: invalid literal for int() with base 10: '0.1'" This issue seems to be easily fixed by changing in the config.py file on line 377 int to float. However, I have tried runing the "run_all.py" test file, but the tests seem to fail both before and after my changes, due to me using Windows and the "run_all.py" script seems to be not Windows compatible. As a consequence I do not seem to be able to verify if this change breaks any other functionality. — Reply to this email directly, view it on GitHub <#314>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AETOR55ADXJN4F3RTVDXZHTWLOKYBANCNFSM6AAAAAASS4S4SM> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[StefanHauer]

Hi Bill,
I am using version 1.23.1 of numpy and I downloaded the latest version directly here from Github so 1.2.0.
Best regards,
Steve

[wshlavacek]

Hi Steve, Your problem seems related to a problem that one of our students is having, who perhaps coincidentally is also working on a Windows machine. We're not quite sure what's going on, because we're having trouble reproducing the problem. The problem is related to the new version of NumPy, which you are using. Here's a workaround that should work. Use Anaconda to build a virtual environment with… Python version 3.9.7 (vs. 3.10) NumPy version 1.22.1 (vs. 1.23) Then pip install PyBNF If you have trouble creating the virtual environment, we can send you a Jupyter notebook Please let us know us know how things go - it would help us fix the problem --Bill

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On Sun, Dec 4, 2022 at 8:24 AM StefanHauer ***@***.***> wrote: Hi Bill, I am using version 1.23.1 of numpy and I downloaded the latest version directly here from Github so 1.2.0. Best regards, Steve — Reply to this email directly, view it on GitHub <#314 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AETOR53FRBSF4AYKSKYVY3DWLSZUNANCNFSM6AAAAAASS4S4SM> . You are receiving this because you commented.Message ID: ***@***.***>