v1.16.0

Curated workflow references

Custom workflow references have been deprecated in favor of curated references to the latest versions of pipelines in the Latch Verified project.

You can import and use a reference as follows.

from latch.verified import deseq2_wf

@workflow
def example(...):
    deseq2_wf(
        report_name=run_name,
        count_table_source="single",
        raw_count_table=count_matrix_file,
        raw_count_tables=[],
        count_table_gene_id_column="gene_id",
        output_location_type="default",
        output_location=custom_output_dir,
        conditions_source=conditions_source,
        manual_conditions=manual_conditions,
        conditions_table=conditions_table,
        design_matrix_sample_id_column=design_matrix_sample_id_column,
        design_formula=design_formula,
        number_of_genes_to_plot=30,
    )

Existing references

• deseq2_wf
• gene_ontology_pathway_analysis
• rnaseq