Release 1.8.3

lemieuxl · Mar 9, 2017 · 6173a48 · 6173a48
2 parents 9d4abab + 8df3963
commit 6173a48
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Showing 4 changed files with 7 additions and 6 deletions.
diff --git a/docs/index.rst b/docs/index.rst
@@ -39,7 +39,7 @@ operating systems. Its usage is shown below:
                           [--report-number NUMBER]
                           [--report-background BACKGROUND] --conf FILE
 
-    Runs the data clean up (pyGenClean version 1.8.2).
+    Runs the data clean up (pyGenClean version 1.8.3).
 
     optional arguments:
       -h, --help            show this help message and exit

diff --git a/docs/module_content/modules.rst b/docs/module_content/modules.rst
@@ -11,7 +11,7 @@ Here is the usage of the main pipeline.
                           [--report-number NUMBER]
                           [--report-background BACKGROUND] --conf FILE
 
-    Runs the data clean up (pyGenClean version 1.8.2).
+    Runs the data clean up (pyGenClean version 1.8.3).
 
     optional arguments:
       -h, --help            show this help message and exit

diff --git a/pyGenClean/run_data_clean_up.py b/pyGenClean/run_data_clean_up.py
@@ -1859,6 +1859,8 @@ def run_remove_heterozygous_haploid(in_prefix, in_type, out_prefix, base_dir,
         )
     if nb_hh_missing:
         nb_hh_missing = int(nb_hh_missing.group(1))
+    else:
+        nb_hh_missing = 0
 
     # We write a LaTeX summary
     latex_file = os.path.join(script_prefix + ".summary.tex")
@@ -1871,7 +1873,7 @@ def run_remove_heterozygous_haploid(in_prefix, in_type, out_prefix, base_dir,
                 "After Plink's heterozygous haploid analysis, a total of "
                 "{:,d} genotype{} were set to missing.".format(
                     nb_hh_missing,
-                    "s" if nb_hh_missing - 1 > 1 else "",
+                    "s" if nb_hh_missing > 1 else "",
                 )
             )
             print >>o_file, latex_template.wrap_lines(text)

diff --git a/setup.py b/setup.py
@@ -14,14 +14,12 @@
 
 import os
 import sys
-import glob
-import shutil
 from setuptools import setup
 
 
 MAJOR = 1
 MINOR = 8
-MICRO = 2
+MICRO = 3
 VERSION = "{0}.{1}.{2}".format(MAJOR, MINOR, MICRO)
 
 
@@ -126,5 +124,6 @@ def setup_package():
     )
     return
 
+
 if __name__ == "__main__":
     setup_package()