diff --git a/docs/index.rst b/docs/index.rst index d48b2d5..baf290d 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -39,7 +39,7 @@ operating systems. Its usage is shown below: [--report-number NUMBER] [--report-background BACKGROUND] --conf FILE - Runs the data clean up (pyGenClean version 1.8.0). + Runs the data clean up (pyGenClean version 1.8.2). optional arguments: -h, --help show this help message and exit diff --git a/docs/module_content/modules.rst b/docs/module_content/modules.rst index 923a08a..37b9d8a 100644 --- a/docs/module_content/modules.rst +++ b/docs/module_content/modules.rst @@ -11,7 +11,7 @@ Here is the usage of the main pipeline. [--report-number NUMBER] [--report-background BACKGROUND] --conf FILE - Runs the data clean up (pyGenClean version 1.8.0). + Runs the data clean up (pyGenClean version 1.8.2). optional arguments: -h, --help show this help message and exit diff --git a/pyGenClean/run_data_clean_up.py b/pyGenClean/run_data_clean_up.py index c698c41..e27cf66 100644 --- a/pyGenClean/run_data_clean_up.py +++ b/pyGenClean/run_data_clean_up.py @@ -956,8 +956,8 @@ def run_sample_missingness(in_prefix, in_type, out_prefix, base_dir, options): # Writing the summary results with open(os.path.join(base_dir, "results_summary.txt"), "a") as o_file: print >>o_file, "# {}".format(script_prefix) - print >>o_file, ("Number of samples with missing rate less or equal " - "to {t}\t{nb:,d}\t\t-{nb:,d}".format( + print >>o_file, ("Number of samples with missing rate higher " + "than {t}\t{nb:,d}\t\t-{nb:,d}".format( t=mind_value, nb=nb_samples, )) @@ -1078,8 +1078,8 @@ def run_snp_missingness(in_prefix, in_type, out_prefix, base_dir, options): # Writing the summary results with open(os.path.join(base_dir, "results_summary.txt"), "a") as o_file: print >>o_file, "# {}".format(script_prefix) - print >>o_file, ("Number of markers with missing rate less or equal " - "to {t}\t{nb:,d}\t-{nb:,d}".format( + print >>o_file, ("Number of markers with missing rate higher " + "than {t}\t{nb:,d}\t-{nb:,d}".format( t=geno_value, nb=nb_markers, )) diff --git a/setup.py b/setup.py index cf5c27d..c88fe2a 100644 --- a/setup.py +++ b/setup.py @@ -21,7 +21,7 @@ MAJOR = 1 MINOR = 8 -MICRO = 1 +MICRO = 2 VERSION = "{0}.{1}.{2}".format(MAJOR, MINOR, MICRO)