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pyGenClean version 1.7.0
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@lemieuxl lemieuxl released this 14 Sep 19:50
· 146 commits to master since this release
1.7.0
1c981f8

These changes will be included in the 1.7 version of pyGenClean:

  • automatic report
    • produce an automatic report (PDF using LaTeX)
    • script to merge multiple reports (for different steps of the QC pipeline)
  • summary files for a QC run including:
    • list of samples that were removed (with reason)
    • list of markers that were removed (with reason)
  • ethnicity module
    • possible to exclude the three reference panels when computing MDS values
    • bug fix when the three reference panels do not have the same list of markers
  • updated documentation
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