Version 1.7.1
These are the changes in the next release:
- Improved content in the automatic report.
- Improvement #7, where the list of significant markers for the plate bias step is no longer reported, but only the number of significant markers for each plate is.
- Improvement #8, where the samples were sorted in the sex check step so that the order is consistent between the table and the different figures (if any).
- Improvement #9, where a table summarizing the status of every related pairs found is shown in the report.
- Now possible to change the title of the automatic report (using the
--report-titleoption). - Better documentation.
Here is a description of the bugs that were fixed in the next release:
- Fixes issue #4, where the automatic report failed if there were no duplicated markers in the dataset.
- Fixes issue #5, where the automatic report failed if there were no duplicated samples in the dataset.
- Fixes issue #6, where the scree plot is not included in the automatic report.
- Fixes issue #10, where there was a problem when Unicode characters were present in figure paths.
- Fixes issue #11, where the pipeline failed if ethnicity was checked without reference populations.
- Fixes issue #12, where the wrong number of markers was included in the report. Now, only the number of unique markers is shown.
- Fixes issue #13, where there was a problem with all paths when running the pipeline on Windows operating system.
- Fixes issue #15, where the
pyGenClean_merge_reportsscript fails when a directory contains a trailing slash ("/"). - Fixes a small bug, where there was an issue in the automatic report if only extract/exclude or keep/remove was used the in
subsetscript. - Fixes a small bug, where output files with no data contained an empty line instead of being empty.
- Fixes a small bug, where the script couldn't find a sample because it was sanitized for LaTeX.