lexibank · FredericBlum · Aug 1, 2024 · Jul 8, 2024
diff --git a/.github/workflows/cldf-validation.yml b/.github/workflows/cldf-validation.yml
@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.6]
+        python-version: ["3.10", 3.11, 3.12]
 
     steps:
     - uses: actions/checkout@v2

diff --git a/.zenodo.json b/.zenodo.json
@@ -8,20 +8,15 @@
     "creators": [
         {
             "name": "Timotheus A. Bodt"
+        },
+        {
+            "name": "Johann-Mattis List"
         }
     ],
     "contributors": [
         {
             "name": "Timotheus A. Bodt",
             "type": "RightsHolder"
-        },
-        {
-            "name": "Timotheus A. Bodt",
-            "type": "DataCurator"
-        },
-        {
-            "name": "Johann-Mattis List",
-            "type": "Other"
         }
     ],
     "communities": [

diff --git a/CONTRIBUTORS.md b/CONTRIBUTORS.md
@@ -2,6 +2,5 @@
 
 Name               | GitHub user | Description |Role
 ---                | ---         | --- | ---
-Timotheus A. Bodt |             | maintainer | Author, RightsHolder, DataCurator
-Johann-Mattis List | @LinguList  | maintainer | Other
-
+Timotheus A. Bodt | @monpasang | Data curation | Author, RightsHolder
+Johann-Mattis List | @LinguList  | maintainer | Author
diff --git a/README.md b/README.md
@@ -1,6 +1,6 @@
 # CLDF dataset derived from Bodt's "Lexical Cognates in Western Kho-Bwa" from 2019
 
-[![CLDF validation](https://github.com/lingpy/bodtkhobwa//workflows/CLDF-validation/badge.svg)](https://github.com/lingpy/bodtkhobwa//actions?query=workflow%3ACLDF-validation)
+[![CLDF validation](https://github.com/lexibank/bodtkhobwa/workflows/CLDF-validation/badge.svg)](https://github.com/lexibank/bodtkhobwa/actions?query=workflow%3ACLDF-validation)
 
 ## How to cite
 
@@ -50,32 +50,31 @@ The collection of the data was funded by:
 ## Statistics
 
 
-[![CLDF validation](https://github.com/lingpy/bodtkhobwa//workflows/CLDF-validation/badge.svg)](https://github.com/lingpy/bodtkhobwa//actions?query=workflow%3ACLDF-validation)
+[![CLDF validation](https://github.com/lexibank/bodtkhobwa/workflows/CLDF-validation/badge.svg)](https://github.com/lexibank/bodtkhobwa/actions?query=workflow%3ACLDF-validation)
 ![Glottolog: 100%](https://img.shields.io/badge/Glottolog-100%25-brightgreen.svg "Glottolog: 100%")
 ![Concepticon: 90%](https://img.shields.io/badge/Concepticon-90%25-green.svg "Concepticon: 90%")
 ![Source: 100%](https://img.shields.io/badge/Source-100%25-brightgreen.svg "Source: 100%")
 ![BIPA: 100%](https://img.shields.io/badge/BIPA-100%25-brightgreen.svg "BIPA: 100%")
 ![CLTS SoundClass: 100%](https://img.shields.io/badge/CLTS%20SoundClass-100%25-brightgreen.svg "CLTS SoundClass: 100%")
 
-- **Varieties:** 8
-- **Concepts:** 662
+- **Varieties:** 8 (linked to 8 different Glottocodes)
+- **Concepts:** 662 (linked to 542 different Concepticon concept sets)
 - **Lexemes:** 4,720
 - **Sources:** 1
 - **Synonymy:** 1.14
 - **Cognacy:** 7,681 cognates in 2,607 cognate sets (1,691 singletons)
 - **Cognate Diversity:** 0.48
 - **Invalid lexemes:** 0
 - **Tokens:** 20,415
-- **Segments:** 232 (0 BIPA errors, 0 CTLS sound class errors, 232 CLTS modified)
+- **Segments:** 232 (0 BIPA errors, 0 CLTS sound class errors, 232 CLTS modified)
 - **Inventory size (avg):** 86.62
 
 # Contributors
 
 Name               | GitHub user | Description |Role
 ---                | ---         | --- | ---
-Timotheus A. Bodt |             | maintainer | Author, RightsHolder, DataCurator
-Johann-Mattis List | @LinguList  | maintainer | Other
-
+Timotheus A. Bodt | @monpasang | Data curation | Author, RightsHolder
+Johann-Mattis List | @LinguList  | maintainer | Author
 
 
 

diff --git a/cldf/README.md b/cldf/README.md
@@ -12,9 +12,9 @@ property | value
 [dc:conformsTo](http://purl.org/dc/terms/conformsTo) | [CLDF Wordlist](http://cldf.clld.org/v1.0/terms.rdf#Wordlist)
 [dc:format](http://purl.org/dc/terms/format) | <ol><li>http://concepticon.clld.org/contributions/Bodt-2019-664</li></ol>
 [dc:license](http://purl.org/dc/terms/license) | https://creativecommons.org/licenses/by/4.0/
-[dcat:accessURL](http://www.w3.org/ns/dcat#accessURL) | https://github.com/lingpy/bodtkhobwa/
-[prov:wasDerivedFrom](http://www.w3.org/ns/prov#wasDerivedFrom) | <ol><li><a href="https://github.com/lingpy/bodtkhobwa//tree/v3.0.1">lingpy/bodtkhobwa/ v3.0.1</a></li><li><a href="https://github.com/glottolog/glottolog/tree/v4.5">Glottolog v4.5</a></li><li><a href="https://github.com/concepticon/concepticon-data/tree/v2.5.0">Concepticon v2.5.0</a></li><li><a href="https://github.com/cldf-clts/clts//tree/b12a7df">CLTS v2.1.0-26-gb12a7df</a></li></ol>
-[prov:wasGeneratedBy](http://www.w3.org/ns/prov#wasGeneratedBy) | <ol><li><strong>lingpy-rcParams</strong>: <a href="./lingpy-rcParams.json">lingpy-rcParams.json</a></li><li><strong>python</strong>: 3.9.9</li><li><strong>python-packages</strong>: <a href="./requirements.txt">requirements.txt</a></li></ol>
+[dcat:accessURL](http://www.w3.org/ns/dcat#accessURL) | https://github.com/lexibank/bodtkhobwa
+[prov:wasDerivedFrom](http://www.w3.org/ns/prov#wasDerivedFrom) | <ol><li><a href="https://github.com/lexibank/bodtkhobwa/tree/v3.1.0">lexibank/bodtkhobwa v3.1.0</a></li><li><a href="https://github.com/glottolog/glottolog/tree/v5.0">Glottolog v5.0</a></li><li><a href="https://github.com/concepticon/concepticon-data/tree/v3.2.0">Concepticon v3.2.0</a></li><li><a href="https://github.com/cldf-clts/clts/tree/v2.3.0">CLTS v2.3.0</a></li></ol>
+[prov:wasGeneratedBy](http://www.w3.org/ns/prov#wasGeneratedBy) | <ol><li><strong>lingpy-rcParams</strong>: <a href="./lingpy-rcParams.json">lingpy-rcParams.json</a></li><li><strong>python</strong>: 3.12.4</li><li><strong>python-packages</strong>: <a href="./requirements.txt">requirements.txt</a></li></ol>
 [rdf:ID](http://www.w3.org/1999/02/22-rdf-syntax-ns#ID) | bodtkhobwa
 [rdf:type](http://www.w3.org/1999/02/22-rdf-syntax-ns#type) | http://www.w3.org/ns/dcat#Distribution
 
@@ -64,8 +64,8 @@ Name/Property | Datatype | Description
 `Glottolog_Name` | `string` | 
 [ISO639P3code](http://cldf.clld.org/v1.0/terms.rdf#iso639P3code) | `string` | 
 [Macroarea](http://cldf.clld.org/v1.0/terms.rdf#macroarea) | `string` | 
-[Latitude](http://cldf.clld.org/v1.0/terms.rdf#latitude) | `decimal` | 
-[Longitude](http://cldf.clld.org/v1.0/terms.rdf#longitude) | `decimal` | 
+[Latitude](http://cldf.clld.org/v1.0/terms.rdf#latitude) | `decimal`<br>&ge; -90<br>&le; 90 | 
+[Longitude](http://cldf.clld.org/v1.0/terms.rdf#longitude) | `decimal`<br>&ge; -180<br>&le; 180 | 
 `Family` | `string` | 
 `SubGroup` | `string` | 
 

diff --git a/cldf/cldf-metadata.json b/cldf/cldf-metadata.json
@@ -11,30 +11,30 @@
     "dc:related": null,
     "dc:source": "sources.bib",
     "dc:title": "CLDF dataset derived from Bodt's \"Lexical Cognates in Western Kho-Bwa\" from 2019",
-    "dcat:accessURL": "https://github.com/lingpy/bodtkhobwa/",
+    "dcat:accessURL": "https://github.com/lexibank/bodtkhobwa",
     "prov:wasDerivedFrom": [
         {
-            "rdf:about": "https://github.com/lingpy/bodtkhobwa/",
+            "rdf:about": "https://github.com/lexibank/bodtkhobwa",
             "rdf:type": "prov:Entity",
-            "dc:created": "v3.0.1",
+            "dc:created": "v3.1.0",
             "dc:title": "Repository"
         },
         {
             "rdf:about": "https://github.com/glottolog/glottolog",
             "rdf:type": "prov:Entity",
-            "dc:created": "v4.5",
+            "dc:created": "v5.0",
             "dc:title": "Glottolog"
         },
         {
             "rdf:about": "https://github.com/concepticon/concepticon-data",
             "rdf:type": "prov:Entity",
-            "dc:created": "v2.5.0",
+            "dc:created": "v3.2.0",
             "dc:title": "Concepticon"
         },
         {
-            "rdf:about": "https://github.com/cldf-clts/clts/",
+            "rdf:about": "https://github.com/cldf-clts/clts",
             "rdf:type": "prov:Entity",
-            "dc:created": "v2.1.0-26-gb12a7df",
+            "dc:created": "v2.3.0",
             "dc:title": "CLTS"
         }
     ],
@@ -45,7 +45,7 @@
         },
         {
             "dc:title": "python",
-            "dc:description": "3.9.9"
+            "dc:description": "3.12.4"
         },
         {
             "dc:title": "python-packages",
@@ -54,9 +54,6 @@
     ],
     "rdf:ID": "bodtkhobwa",
     "rdf:type": "http://www.w3.org/ns/dcat#Distribution",
-    "dialect": {
-        "commentPrefix": null
-    },
     "tables": [
         {
             "dc:conformsTo": "http://cldf.clld.org/v1.0/terms.rdf#FormTable",
@@ -183,7 +180,7 @@
                     {
                         "datatype": "string",
                         "propertyUrl": "http://cldf.clld.org/v1.0/terms.rdf#glottocode",
-                        "valueUrl": "http://glottolog.org/resource/languoid/id/{glottolog_id}",
+                        "valueUrl": "http://glottolog.org/resource/languoid/id/{Glottocode}",
                         "name": "Glottocode"
                     },
                     {
@@ -253,7 +250,7 @@
                     {
                         "datatype": "string",
                         "propertyUrl": "http://cldf.clld.org/v1.0/terms.rdf#concepticonReference",
-                        "valueUrl": "http://concepticon.clld.org/parameters/{concepticon_id}",
+                        "valueUrl": "http://concepticon.clld.org/parameters/{Concepticon_ID}",
                         "name": "Concepticon_ID"
                     },
                     {

diff --git a/cldf/lingpy-rcParams.json b/cldf/lingpy-rcParams.json
@@ -64,7 +64,7 @@
         10,
         10
     ],
-    "filename": "lingpy-2022-03-16",
+    "filename": "lingpy-2024-07-08",
     "gap_symbol": "-",
     "gap_weight": 0.5,
     "gop": -2,
@@ -123,7 +123,7 @@
     "scorer": {},
     "sonar": true,
     "stress": "\u02c8\u02cc'",
-    "timestamp": "2022-03-16 22:07",
+    "timestamp": "2024-07-08 14:08",
     "tones": "\u00b9\u00b2\u00b3\u2074\u2075\u2076\u2077\u2078\u2079\u2070\u2081\u2082\u2083\u2084\u2085\u2086\u2087\u2088\u2089\u20800123456789\u02e5\u02e6\u02e7\u02e8\u02e9\u02ea\u02eb-\ua708-\ua709-\ua70a-\ua70b-\ua70c-\ua70d-\ua70e-\ua70f-\ua710-\ua711-\ua712-\ua713-\ua714-\ua715-\ua716-\ua717-\ua718-\ua719-\ua71a-\ua700-\ua701-\ua702-\ua703-\ua704-\ua705-\ua706-\ua707",
     "tree_calc": "neighbor",
     "unique_sequences": true,

diff --git a/cldf/requirements.txt b/cldf/requirements.txt
@@ -1,56 +1,52 @@
 appdirs==1.4.4
-bs4==0.0.1
-certifi==2021.10.8
-cldfbench==1.9.0
-cldfcatalog==1.4.0
-cldfzenodo==0.2.0
-clldutils==3.10.1
-colorlog==6.6.0
-csvw==2.0.0
-gitdb==4.0.9
-greenlet==1.1.2
-html5lib==1.1
-idna==3.3
-igraph==0.9.9
-iniconfig==1.1.1
+attrs==23.2.0
+Babel==2.15.0
+bibtexparser==2.0.0b7
+bs4==0.0.2
+certifi==2024.7.4
+cldfbench==1.14.0
+cldfcatalog==1.5.1
+cldfzenodo==2.1.1
+clldutils==3.22.2
+colorama==0.4.6
+colorlog==6.8.2
+csvw==3.3.0
+gitdb==4.0.11
+idna==3.7
 isodate==0.6.1
-lingpy==2.6.9
-Markdown==3.3.6
-nameparser==1.1.1
-networkx==2.6.3
-newick==1.3.2
-numpy==1.22.2
-openpyxl==3.0.9
-packaging==21.3
-pluggy==1.0.0
-purl==1.6
-py==1.11.0
+jsonschema==4.22.0
+lingpy==2.6.13
+lxml==5.2.2
+Markdown==3.6
+nameparser==1.1.3
+networkx==3.3
+newick==1.9.0
+numpy==2.0.0
+openpyxl==3.1.5
+packaging==24.1
 pybtex==0.24.0
-pycldf==1.25.1
-pyclts==3.1.1
-pyconcepticon==2.8.0
-pycountry==22.1.10
--e git+https://github.com/clld/pyglottolog.git@13af3b6f070bad186768c589c7b335edc43b7a7f#egg=pyglottolog
-pylexibank==3.3.0
-pysem==0.4.0
-pytest==7.0.1
-python-dateutil==2.8.2
-python-igraph==0.9.9
-regex==2022.1.18
-requests==2.27.1
+pycldf==1.38.1
+pyclts==3.2.0
+pyconcepticon==3.1.0
+pycountry==24.6.1
+pyglottolog==3.13.0
+pylatexenc==2.10
+pylexibank==3.5.0
+python-dateutil==2.9.0.post0
+rdflib==7.0.0
+referencing==0.35.1
+regex==2024.5.15
+requests==2.32.3
 rfc3986==1.5.0
-segments==2.2.0
+segments==2.2.1
 six==1.16.0
-smmap==5.0.0
-soupsieve==2.3.1
-SQLAlchemy==1.4.31
-tabulate==0.8.9
-termcolor==1.1.0
-texttable==1.6.4
-tqdm==4.62.3
+smmap==5.0.1
+soupsieve==2.5
+SQLAlchemy==1.4.52
+tabulate==0.9.0
+termcolor==2.4.0
+tqdm==4.66.4
 uritemplate==4.1.1
-urllib3==1.26.8
-webencodings==0.5.1
+urllib3==2.2.2
 xlrd==2.0.1
-zenodoclient==0.4.1
-zipp==3.7.0
+zenodoclient==0.5.1
diff --git a/cldf/sources.bib b/cldf/sources.bib
@@ -2,7 +2,7 @@ @article{Bodt2019
     author = {Bodt, Timotheus A. and List, Johann-Mattis},
     journal = {Papers in Historical Phonology},
     number = {1},
-    pages = {22-44},
+    pages = {22--44},
     title = {Testing the predictive strength of the comparative method: An ongoing experiment on unattested words in Western Kho-Bwa langauges},
     volume = {4},
     year = {2019}

diff --git a/lexibank_bodtkhobwa.py b/lexibank_bodtkhobwa.py
@@ -31,6 +31,7 @@ class Dataset(pylexibank.Dataset):
     language_class = CustomLanguage
     cross_concept_cognates = True
     lexeme_class = CustomLexeme
+    writer_options = dict(keep_languages=False, keep_parameters=False)
 
     def cmd_makecldf(self, args):
 

diff --git a/raw/bodt-khobwa-cleaned.tsv b/raw/bodt-khobwa-cleaned.tsv
@@ -4431,9 +4431,9 @@ ID	ALIGNMENT	COGIDS	CONCEPT	CONCEPT_IN_SOURCE	CROSSIDS	DOCULECT	FORM	MORPHEMES	N
 #
 4857	ʦ ɔ p		step onto		938	Duhumbi	ʦɔp	STEP			938	i n c	ʦ ɔ p	ʦɔp
 #
-3955	ts ɐ k	1075	stich	stich	1075	Khoina	ʦɐk	STICH			1075	i n c	ts ɐ k	ʦɐk
-3959	ts~ʨ/ʨ a k	1075	stich	stich	1075	Rupa	ʦak	STICH			1075	i n c	ts~ʨ/ʨ a k	ʦak ~ ʨak
-3960	tɕ a k	1075	stich	stich	1075	Shergaon	ʨak	STICH			1075	i n c	tɕ a k	ʨak
+3955	ts ɐ k	1075	stich	stitch	1075	Khoina	ʦɐk	STITCH			1075	i n c	ts ɐ k	ʦɐk
+3959	ts~ʨ/ʨ a k	1075	stich	stitch	1075	Rupa	ʦak	STITCH			1075	i n c	ts~ʨ/ʨ a k	ʦak ~ ʨak
+3960	tɕ a k	1075	stich	stitch	1075	Shergaon	ʨak	STITCH			1075	i n c	tɕ a k	ʨak
 #
 3961	kʰ aj	1076	stick	stick	1076	Khispi	kʰaj	STICK			1076	i n	kʰ aj	kʰaj
 3962	kʰ ɛj	1076	stick	stick	1076	Duhumbi	kʰɛj	STICK			1076	i n	kʰ ɛj	kʰɛj

diff --git a/raw/sources.bib b/raw/sources.bib
@@ -4,6 +4,6 @@ @Article{Bodt2019
   journal     = {Papers in Historical Phonology},
   year        = {2019},
   number      = {1},
-  pages       = {22-44},
+  pages       = {22--44},
   volume      = {4},
 }