This repository contains code for analysis for the paper 'The great tit HapMap project: a continental-scale analysis of genomic variation in a songbird'. The manuscript itself was written in R markdown, and all code is referenced from within the .Rmd file. See the published version of the manuscript itself for a link to the data, which is hosted on Dryad.
As I'm no longer working in academia this repository is not maintained - for enquires about the manuscript, please contact Prof Jon Slate: j.slate@sheffield.ac.uk.