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fermi hangs on a very small dataset #4
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With your command line, fermi should not use ropebwt. Can you find string |
Yes I can, full makefile shown below
|
I see. I was using an old version of run-fermi.pl. More recent version use ropebwt by default. Anyway, I can see the problem now: |
For small files, actually we'd better not use |
thanks, specifying |
I've run fermi on a very small dataset containing 22 fasta records using the following cmd:
however
fermi
hangs indefinitely. When I look at top I can see thatfermi ropebwt
is constantly in the sleep state:I've tried using both the git HEAD and with release 1.1
<reads.fa>
contains:The text was updated successfully, but these errors were encountered: