Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

p3.mag.gz stalled and then fail #8

Open
cartal opened this issue May 18, 2016 · 0 comments
Open

p3.mag.gz stalled and then fail #8

cartal opened this issue May 18, 2016 · 0 comments

Comments

@cartal
Copy link

cartal commented May 18, 2016

Hi

I'm using fermi to assemble a very large animal genome with a single 180-bp Illumina HiSeq library. In this case, with the default parameters FERMI runs smoothly up to the generation of a rather large (7.1 TiB so far) p3.mag.gz file and later it fails probably due to disk space issues.

So my questions are: What is the p3.mag.gz? and how can I optimise this step?

Thank you

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant