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Visualize the operation of the local maxima finder tree detection algorithm by creating a beautiful GIF

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ITD Animator

This function allows the user to visualize the working operation of the local maxima finder tree detection algorithm by creating a beautiful GIF of the process.

The function works by taking an input CHM, performing local maxima tree detection with lidR locate_trees, and subsequently plotting the moving window as it proceeds through the CHM cells.

This work is based on the demonstration by ptompalski his original code can be viewed here.

Animator Arguments:

chm: A Canopy Height Model (CHM) raster layer. (SpatRaster)

f: A function or fixed number defining the moving window size, defaults to a variable window size based on CHM height (Popescu and Wynne 2004).

dir_out: Directory path where the output GIF and temporary frames will be stored.

gif_out_name: Name of the output GIF file, defaults to "ITD_animation.gif".

buffer: Buffer distance added around the animation frame, defaults to 2.5m.

delay: Delay in seconds between frames in the GIF, defaults to 0.05 (5ms).

circular: Logical, if TRUE, the moving window is circular, defaults to TRUE. Otherwise, window is square.

subset: Logical, if TRUE, only a subset of the CHM cells defined by sub_range is used for animation, defaults to TRUE.

sub_range: Range of indices to define the CHM subset for the animation, defaults to 450:1450.

col_pal: Color palette for the CHM visualization, defaults to scale_fill_viridis_c().

clear_frames: Logical, if TRUE, temporary frame images are deleted after creating the GIF, defaults to FALSE.

skip_cells: Integer, number of CHM cells to skip when creating the animation, defaults to 1 (no skipping).

ttop_size: Size of the points representing tree tops, defaults to 4. (see plot.sf)

ttop_shape: Shape of the points representing tree tops, defaults to 4. (see plot.sf)

ttop_col: Color of the points representing tree tops, defaults to "black". (see plot.sf)

hillshade: Logical, if TRUE, a hillshade layer is created and used as the background, defaults to FALSE.

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Visualize the operation of the local maxima finder tree detection algorithm by creating a beautiful GIF

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