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cluster_config.json
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cluster_config.json
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{
"__default__" :
{
"job-name": "{rule}",
"partition": "broadwl",
"time": "00:30:00",
"nodes": "1",
"mem": "1G",
"output": "logs/{rule}.log",
"error": "logs/{rule}.log",
"email-type": "FAIL",
"email": "liliw1@uchicago.edu",
"ntasks-per-node": "1"
},
"covariates" :
{
"mem": "20G"
},
"coexp_module" :
{
"mem": "20G"
},
"z" :
{
"job-name": "{rule}.{wildcards.module}.{wildcards.chr}",
"time": "4:00:00",
"mem": "40G",
"output": "logs/{rule}.{wildcards.module}.{wildcards.chr}.%J.log",
"error": "logs/{rule}.{wildcards.module}.{wildcards.chr}.%J.log"
},
"z_null" :
{
"job-name": "zn.{wildcards.module}.{wildcards.chr}.{wildcards.perm}",
"time": "4:00:00",
"mem": "40G",
"output": "logs/{rule}.{wildcards.module}.{wildcards.chr}.%J.log",
"error": "logs/{rule}.{wildcards.module}.{wildcards.chr}.%J.log"
},
"p" :
{
"job-name": "{rule}.{wildcards.module}.{wildcards.chr}",
"time": "4:00:00",
"mem": "20G",
"output": "logs/{rule}.{wildcards.module}.{wildcards.chr}.%J.log",
"error": "logs/{rule}.{wildcards.module}.{wildcards.chr}.%J.log"
},
"p_null" :
{
"job-name": "pn.{wildcards.module}.{wildcards.chr}.{wildcards.perm}",
"time": "4:00:00",
"mem": "20G",
"output": "logs/{rule}.{wildcards.module}.{wildcards.chr}.%J.log",
"error": "logs/{rule}.{wildcards.module}.{wildcards.chr}.%J.log"
},
"FDR_chr_module" :
{
"job-name": "FDR.chr.module.{wildcards.perm}",
"time": "6:00:00",
"partition": "bigmem2",
"mem": "300G"
}
}